This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00004U7.1

Display Name: Uganda/LOC_00004U7.1/2025-01-19
S. Nabadda, I. Sewanyana, H. Kyobe Bosa, M. Wayengera, S. K. Tessema, D. Ssemwanga, P. van Heusden, A. Christoffels, G. Mboowa, D. J. Park, H. Onywera, C. K. Tanui, S. W. Mwangi, S. Balinandi, T. Andrew, J. Sseruyange, H. R. Oundo, W. Tenywa, G. T. Wenka, M. Murungi, J. M. Kabahita, V. Nakintu, C. Makoha, A. Ssemaganda, S. Kanyerezi & A. Ayitewala

Sample details

Collection date
2025-01-19
Collection date (lower bound)
2025-01-19
Collection date (upper bound)
2025-01-19
Earliest release date
2025-02-05
Collection country
Uganda
Collection subdivision level 1
Kampala

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-16 19:39insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Central Public Health Laboratories, Kampala

INSDC

NCBI release date
2025-02-05
NCBI update date
2025-02-06
INSDC accession
Bioproject accession
Biosample accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
18225
Total SNPs
171
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
96.56%

Submission details

Submission ID
OZ222062.1
Submitting group
Date submitted
2025-09-16 19:39:25 UTC
Date released
2025-09-16 19:39:44 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_002549.1 reference

Substitutions

  • A134C
  • A135G
  • A337G
  • C354T
  • T895C
  • A1126C
  • C1321T
  • G1450T
  • C1646T
  • T1885C
  • C1893T
  • A1978G
  • C2247T
  • T2356C
  • G2390A
  • C2452T
  • C2618T
  • T2662A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_002549.1 reference

    Substitutions

    GP

  • GP:S17N
  • GP:P411L
  • GP:T417M
  • GP:P419L
  • GP:T442A
  • GP:P451S

    • L

  • L:K43R
  • L:N120S
  • L:I954V
  • L:D1383E
  • L:S1585P
  • L:T1704P
  • L:A1748V
  • L:V1760I
  • L:P1877S
  • L:V1889I

    • NP

  • NP:T479I
  • NP:S597L
  • NP:G645R
  • NP:L721F

    • VP30

  • VP30:V71I

    • VP35

  • VP35:V185I
  • VP35:I190T

    • VP40

  • VP40:M276I

    • sGP

  • sGP:S17N

    • ssGP

  • ssGP:S17N
    • Deletions
    None
    Insertions
    None

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