This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00004U7.1

Uganda/LOC_00004U7.1
A. A. Ahmed, J. M. McFalls, C. Hoffmann, C. M. Filone, S. M. Stewart, J. Paragas, S. Khodjaev, D. Shermukhamedova, C. S. Schmaljohn, R. W. Doms & A. Bertolotti-Ciarlet

University of Pennsylvania, Microbiology

Sample details

Earliest release date
2005-02-16
Sampling location
Uganda
Isolate name
UG3010

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-22 14:37insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2005-02-16
INSDC accession M segment

Host

Host

Submission details

Submission ID
AY900143.1.M
Submitting group
Date submitted
2026-05-22 14:36:55 UTC
Date released
2026-05-22 14:38:31 UTC

Clade & Lineage

Closest reference M segment
M (OR047158.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs M segment
1162
Length M segment
5100 (94.4%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OR047158.1 references

Substitutions

M segment

  • T80A
  • C86T
  • A87G
  • T89C
  • C91T
  • G92A
  • A93G
  • A94G
  • A96T
  • T97C
  • A98G
  • T104C
  • G106A
  • T109C
  • C112T
  • T113C
  • C115T
  • T117C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OR047158.1 references

Substitutions

GPC

  • GPC:L2M
  • GPC:H4C
  • GPC:F5L
  • GPC:E6R
  • GPC:H7L
  • GPC:M8V
  • GPC:F13L
  • GPC:V14A
  • GPC:F15L
  • GPC:I18L
  • GPC:W20E
  • GPC:S21G
  • GPC:G22N
  • GPC:G23D
  • GPC:L25V
  • GPC:A26T
  • GPC:D27S
  • GPC:E28A
Deletions
N/A
Insertions
N/A

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