This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00004U7.1

Display Name: Uganda/LOC_00004U7.1/2025-01-19
Nabadda, S.; Sewanyana, I.; Kyobe Bosa, H.; Wayengera, M.; Tessema, S. K.; Ssemwanga, D.; van Heusden, P.; Christoffels, A.; Mboowa, G.; Park, D. J.; Onywera, H.; Tanui, C. K.; Mwangi, S. W.; Balinandi, S.; Andrew, T.; Sseruyange, J.; Oundo, H. R.; Tenywa, W.; Wenka, G. T.; Murungi, M.; Kabahita, J. M.; Nakintu, V.; Makoha, C.; Ssemaganda, A.; Kanyerezi, S.; Ayitewala, A.

Submission details

Submission ID
OZ222062.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-13 17:49:13 UTC
Date released
2025-03-13 17:49:25 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-03-13 17:49insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
The Central Public Health Laboratories, Kampala

INSDC

Bioproject accession
PRJEB85569
Biosample accession
SAMEA117658922
INSDC accession
OZ222062.1
NCBI release date
2025-02-05
NCBI update date
2025-02-06

Alignment and QC metrics

Completeness
96.56%
Length
18875
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
171
Total unknown nucs
650

Sample details

Earliest release date
2025-02-05
Collection subdivision level 1
Kampala
Collection country
Uganda
Collection date
2025-01-19
Collection date (lower bound)
2025-01-19
Collection date (upper bound)
2025-01-19

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Nucleotide mutations

Mutations called relative to the NC_002549.1 reference

Substitutions

  • A134C
  • A135G
  • A337G
  • C354T
  • T895C
  • A1126C
  • C1321T
  • G1450T
  • C1646T
  • T1885C
  • C1893T
  • A1978G
  • C2247T
  • T2356C
  • G2390A
  • C2452T
  • C2618T
  • T2662A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_002549.1 reference

    Substitutions

    GP

  • GP:S17N
  • GP:P411L
  • GP:T417M
  • GP:P419L
  • GP:T442A
  • GP:P451S

    • L

  • L:K43R
  • L:N120S
  • L:I954V
  • L:D1383E
  • L:S1585P
  • L:T1704P
  • L:A1748V
  • L:V1760I
  • L:P1877S
  • L:V1889I

    • NP

  • NP:T479I
  • NP:S597L
  • NP:G645R
  • NP:L721F

    • VP30

  • VP30:V71I

    • VP35

  • VP35:V185I
  • VP35:I190T

    • VP40

  • VP40:M276I

    • sGP

  • sGP:S17N

    • ssGP

  • ssGP:S17N
    • Deletions
    None
    Insertions
    None

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