This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00004U7.1

Display Name: Uganda/LOC_00004U7.1/2025-01-19
S. Nabadda, I. Sewanyana, H. Kyobe Bosa, M. Wayengera, S. K. Tessema, D. Ssemwanga, P. van Heusden, A. Christoffels, G. Mboowa, D. J. Park, H. Onywera, C. K. Tanui, S. W. Mwangi, S. Balinandi, T. Andrew, J. Sseruyange, H. R. Oundo, W. Tenywa, G. T. Wenka, M. Murungi, J. M. Kabahita, V. Nakintu, C. Makoha, A. Ssemaganda, S. Kanyerezi & A. Ayitewala

Submission details

Submission ID
OZ222062.1
Submitting group
Date submitted
2025-07-18 15:33:14 UTC
Date released
2025-07-18 15:33:38 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-18 15:33insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Central Public Health Laboratories, Kampala

INSDC

Bioproject accession
Biosample accession
INSDC accession
NCBI release date
2025-02-05
NCBI update date
2025-02-06

Alignment and QC metrics

Completeness
96.56%
Length
18225
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
171
Total unknown nucs
0

Sample details

Earliest release date
2025-02-05
Collection subdivision level 1
Kampala
Collection country
Uganda
Collection date
2025-01-19
Collection date (lower bound)
2025-01-19
Collection date (upper bound)
2025-01-19

Host

Host name scientific
Homo sapiens
Host taxon id

Nucleotide mutations

Mutations called relative to the NC_002549.1 reference

Substitutions

  • A134C
  • A135G
  • A337G
  • C354T
  • T895C
  • A1126C
  • C1321T
  • G1450T
  • C1646T
  • T1885C
  • C1893T
  • A1978G
  • C2247T
  • T2356C
  • G2390A
  • C2452T
  • C2618T
  • T2662A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_002549.1 reference

    Substitutions

    GP

  • GP:S17N
  • GP:P411L
  • GP:T417M
  • GP:P419L
  • GP:T442A
  • GP:P451S

    • L

  • L:K43R
  • L:N120S
  • L:I954V
  • L:D1383E
  • L:S1585P
  • L:T1704P
  • L:A1748V
  • L:V1760I
  • L:P1877S
  • L:V1889I

    • NP

  • NP:T479I
  • NP:S597L
  • NP:G645R
  • NP:L721F

    • VP30

  • VP30:V71I

    • VP35

  • VP35:V185I
  • VP35:I190T

    • VP40

  • VP40:M276I

    • sGP

  • sGP:S17N

    • ssGP

  • ssGP:S17N
    • Deletions
    None
    Insertions
    None

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