This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00004QF.1

Israel/Isr00-PigC/unknown
C. Banet-Noach, M. Malkinson, A. Brill, I. Samina, H. Yadin, Y. Weisman, S. Pokamunski, R. King, V. Deubel, Y. Stram & C. Banet

Kimron Veterinary Institute, Avian and Aquatic Diseases

Sample details

Earliest release date
2001-05-31
Sampling location
Israel
Isolate name
Isr00-PigC

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-21 21:23insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2001-05-31
NCBI update date
2016-07-22
INSDC accession

Host

Host

Submission details

Submission ID
AF380671.1
Submitting group
Date submitted
2026-03-21 21:23:04 UTC
Date released
2026-03-21 21:24:20 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
49
Length
1278 (11.6%)
Amino Acid Mutations from founder clade
  • env:F90Y
  • env:L239P
  • env:M240Y
  • env:K249R
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C990T
  • A1005G
  • G1011A
  • T1014C
  • T1071C
  • C1089T
  • G1116T
  • G1185A
  • T1235A
  • G1244A
  • T1332C
  • T1343C
  • C1377T
  • T1389C
  • T1407C
  • C1422T
  • G1441A
  • A1446G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

env

  • env:F90Y
  • env:R93K
  • env:I126T
  • env:V159I
  • env:L167F
  • env:L239P
  • env:M240Y
  • env:K249R
Deletions
N/A
Insertions
N/A

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