This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00004QF.1

China/LOC_00004QF.1
A. A. Ahmed, J. M. McFalls, C. Hoffmann, C. M. Filone, S. M. Stewart, J. Paragas, S. Khodjaev, D. Shermukhamedova, C. S. Schmaljohn, R. W. Doms & A. Bertolotti-Ciarlet

University of Pennsylvania, Microbiology

Sample details

Earliest release date
2005-02-16
Sampling location
China
Isolate name
Hy13

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-12 21:08insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2005-02-16
INSDC accession M segment

Host

Host

Submission details

Submission ID
AY900145.1.M
Submitting group
Date submitted
2026-06-12 21:07:57 UTC
Date released
2026-06-12 21:09:43 UTC

Clade & Lineage

Closest reference M segment
M (MH396653.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs M segment
954
Length M segment
5070 (92.9%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & MH396653.1 references

Substitutions

M segment

  • A76G
  • C77T
  • T78C
  • G80T
  • A84G
  • C88T
  • C92T
  • T94C
  • T96C
  • T98C
  • T101C
  • G103T
  • A104T
  • A108G
  • A112T
  • T116C
  • C118T
  • G124A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & MH396653.1 references

Substitutions

GPC

  • GPC:H2Y
  • GPC:I3T
  • GPC:S4P
  • GPC:M6L
  • GPC:Y7C
  • GPC:F10L
  • GPC:C15W
  • GPC:G16S
  • GPC:G18E
  • GPC:K19G
  • GPC:T20S
  • GPC:N21H
  • GPC:P23L
  • GPC:H24S
  • GPC:G26K
  • GPC:E28Q
  • GPC:N30S
  • GPC:H33S
Deletions
N/A
Insertions
N/A

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