This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00004QF.1

South_Africa/LOC_00004QF.1
A. A. Ahmed, J. M. McFalls, C. Hoffmann, C. M. Filone, S. M. Stewart, J. Paragas, S. Khodjaev, D. Shermukhamedova, C. S. Schmaljohn, R. W. Doms & A. Bertolotti-Ciarlet

University of Pennsylvania, Microbiology

Sample details

Earliest release date
2005-02-16
Sampling location
South Africa
Isolate name
SPU128/84

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2005-02-16
INSDC accession M

Host

Host

Submission details

Submission ID
AY900141.1.M
Submitting group
Date submitted
2026-08-19 19:21:33 UTC
Date released
2026-08-19 19:22:38 UTC

Files

Annotations

Alignment and QC

Total SNPs M
220
Total ambiguous nucs M
2
Length M
5055 (94.2%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • A117G
  • C162T
  • A174G
  • A192G
  • C193T
  • C194T
  • A203G
  • C217T
  • C229A
  • C239T
  • T254C
  • T259C
  • C275T
  • G295A
  • C320T
  • C330T
  • G346A
  • C354T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:I9V
  • GPC:H24Y
  • GPC:R28G
  • GPC:T34V
  • GPC:P42L
  • GPC:P46Q
  • GPC:L56P
  • GPC:S68N
  • GPC:P80S
  • GPC:G85E
  • GPC:P88S
  • GPC:S90P
  • GPC:V98A
  • GPC:T100A
  • GPC:T102I
  • GPC:L105S
  • GPC:G108S
  • GPC:P112S
Deletions
N/A
Insertions
N/A

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