This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00004NK.1

Display Name: Israel/LOC_00004NK.1
C. Banet-Noach, M. Malkinson, A. Brill, I. Samina, H. Yadin, Y. Weisman, S. Pokamunski, R. King, V. Deubel, Y. Stram & C. Banet

Submission details

Submission ID
AF380671.1
Submitting group
Date submitted
2025-07-11 18:50:54 UTC
Date released
2025-07-11 18:51:17 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-11 18:51insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Kimron Veterinary Institute, Avian and Aquatic Diseases

Alignment and QC metrics

Completeness
11.59%
Length
1278
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
49
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2001-05-31
Collection country
Israel
Collection date (upper bound)
2001-05-31

Host

Host name scientific
Columbidae
Host taxon id

INSDC

INSDC accession
NCBI release date
2001-05-31
NCBI update date
2016-07-22

Lineage

Lineage
1A

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C990T
  • A1005G
  • G1011A
  • T1014C
  • T1071C
  • C1089T
  • G1116T
  • G1185A
  • T1235A
  • G1244A
  • T1332C
  • T1343C
  • C1377T
  • T1389C
  • T1407C
  • C1422T
  • G1441A
  • A1446G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    env

  • env:F90Y
  • env:R93K
  • env:I126T
  • env:V159I
  • env:L167F
  • env:L239P
  • env:M240Y
  • env:K249R
    • Deletions
    None
    Insertions
    None

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