This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00004LP.1

Russia/LOC_00004LP.1
R. Hewson, A. Gmyl, L. Gmyl, S. E. Smirnova, G. Karganova, B. Jamil, R. Hasan, J. Chamberlain, C. Clegg & S. E. Smironova

HPA Porton Down, Special Pathogens

Sample details

Earliest release date
2004-10-02
Sampling location
Russia
Isolate name
K229-243

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2004-10-02
INSDC accession M
INSDC accession S

Submission details

Submission ID
AY573568.1.M/AY573567.1.S
Submitting group
Date submitted
2026-08-19 19:21:33 UTC
Date released
2026-08-19 19:22:38 UTC

Lineage

Segment S Lineage
V

Files

Annotations

Alignment and QC

Total SNPs S
103
Total inserted nucs S
1
Total ambiguous nucs S
1
Length S
568 (33.9%)
Total SNPs M
71
Length M
433 (8.07%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • A3608G
  • C3614T
  • T3632C
  • C3638T
  • T3662C
  • C3671T
  • T3692A
  • G3698A
  • C3707T
  • T3713C
  • T3716C
  • A3719G
  • T3720G
  • A3722G
  • G3728A
  • T3747C
  • T3749C
  • G3761A

S

  • G1090A
  • T1096A
  • T1099C
  • C1108T
  • G1117A
  • G1129A
  • C1147T
  • T1153C
  • T1174C
  • T1183C
  • C1189T
  • C1193T
  • T1195G
  • A1222T
  • G1234A
  • G1246T
  • T1261C
  • C1267T
Deletions
N/A
Insertions

S

ins_1577:A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:L1210V
  • GPC:Y1219H
  • GPC:R1284K
  • GPC:I1285V

NP

  • NP:N419S
  • NP:V436I
Deletions
N/A
Insertions
N/A

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