This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00004LP.1

Display Name: Nigeria/LOC_00004LP.1
R. Hewson, A. Gmyl, L. Gmyl, S. E. Smirnova, G. Karganova, B. Jamil, R. Hasan, J. Chamberlain, C. Clegg & S. E. Smironova

Sample details

Collection date (upper bound)
2004-10-02
Earliest release date
2004-10-02
Collection country
Nigeria

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-17 11:44insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
HPA Porton Down, Special Pathogens

INSDC

NCBI release date
2004-10-02
INSDC accession M
INSDC accession S

Alignment and QC metrics M

Length M
433
Total SNPs M
9
Total inserted nucs M
0
Total deleted nucs M
0
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
8.07%
Total stop codons M
0

Alignment and QC metrics S

Length S
569
Total SNPs S
96
Total inserted nucs S
3
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
33.85%
Total stop codons S
0

Submission details

Submission ID
AY573566.1.M/AY573565.1.S
Submitting group
Date submitted
2025-12-17 11:44:21 UTC
Date released
2025-12-17 11:45:11 UTC

Lineage

Segment S Lineage
IV.1

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • M:C3587T
  • M:C3596T
  • M:C3614T
  • M:T3692A
  • M:G3782A
  • M:T3812C
  • M:A3851G
  • M:A3932G
  • M:C3965T

    • S

  • S:T1096A
  • S:T1099C
  • S:C1100T
  • S:C1108A
  • S:C1147T
  • S:T1183C
  • S:C1189T
  • S:T1195A
  • S:T1204C
  • S:A1216G
  • S:A1222T
  • S:A1269T
  • S:A1273G
  • S:C1282T
  • S:T1285C
  • S:C1297T
  • S:C1300T
  • S:C1303T
    • Deletions
    None
    Insertions
    ins_S:1538:TTC

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:Q405L
  • NP:N419S
  • NP:T422A
  • NP:V436I
  • NP:Q444K
    • Deletions
    None
    Insertions
    None

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