This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00004LP.1

Display Name: Uganda/LOC_00004LP.1/2022-10-02
S. Balinandi, S. Whitmer, S. Mulei, C. Nassuna, G. Pimundu, T. Muyigi, M. Kainulainen, E. Shedroff, I. Krapiunaya, F. Scholte, L. Nyakarahuka, A. Tumusiime, J. Kyondo, J. Baluku, J. Kiconco, J. R. Harris, A. R. Ario, A. Kagirita, H. K. Bosa, I. Ssewanyana, S. Nabadda, H. G. Mwebesa, J. R. Aceng, D. Atwine, ..., J. Klena

Sample details

Collection date
2022-10-02
Collection date (lower bound)
2022-10-02
Collection date (upper bound)
2022-10-02
Earliest release date
2023-08-08
Collection country
Uganda
Isolate name
Ebolavirus/H.sapiens-wt/Uganda/2022/2022002554_C064

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-16 07:27insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Centers for Disease Control and Prevention, Viral Special Pathogens Branch

INSDC

NCBI release date
2023-08-08
NCBI update date
2024-09-09
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
18791
Total SNPs
132
Total inserted nucs
11
Total deleted nucs
11
Total ambiguous nucs
7
Total unknown nucs
22
Total frame shifts
0
Completeness
99.40%

Submission details

Submission ID
OQ673062.1
Submitting group
Date submitted
2025-09-16 07:27:05 UTC
Date released
2025-09-16 07:38:30 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_002549.1 reference

Substitutions

  • A309G
  • A314G
  • A496G
  • G575A
  • G599A
  • T718C
  • G982A
  • T1063C
  • A1537C
  • C1646T
  • A1669G
  • T1816G
  • C1837T
  • A1978G
  • G1984A
  • C2094T
  • C2194T
  • A2293G
    • Deletions
    18661-18671
    Insertions
    ins_18621:NASATCGGA, ins_18629:CG

    Amino acid mutations

    Mutations called relative to the NC_002549.1 reference

    Substitutions

    GP

  • GP:G3S
  • GP:S408N

    • L

  • L:K43R
  • L:K651N
  • L:I954V
  • L:D1383E
  • L:S1585P
  • L:V1600I
  • L:N1822D
  • L:P1877S
  • L:K1911R
  • L:N1916T

    • NP

  • NP:V40I
  • NP:D48N
  • NP:S546L
  • NP:G645R
  • NP:L721F

    • VP30

  • VP30:V71I

    • VP35

  • VP35:N153S
  • VP35:I190T

    • VP40

  • VP40:R2K

    • sGP

  • sGP:G3S

    • ssGP

  • ssGP:G3S
    • Deletions
    None
    Insertions
    None

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