This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00004AA.1

LOC_00004AA.1
J. D. Meissner, S. C. St. Jeor & S. T. Nichol

University of Nevada, Reno, Microbiology

Sample details

Earliest release date
2003-10-20
Isolate name
Matin

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2003-10-20
INSDC accession L

Submission details

Submission ID
AY422208.2.L
Submitting group
Date submitted
2026-10-09 12:02:51 UTC
Date released
2026-10-09 12:03:39 UTC

Files

Annotations

Alignment and QC

Total SNPs L
1630
Total inserted nucs L
60
Length L
12168 (100%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • G23C
  • A35G
  • G43C
  • T49C
  • T61C
  • C63G
  • C64T
  • T65C
  • T66C
  • G69A
  • G71T
  • G88A
  • G93A
  • A109G
  • C117A
  • G119A
  • A124G
  • T131A
Deletions
N/A
Insertions

L

ins_58:T, ins_11927:GT, ins_12053:CTACAATGTTCTCAACTATTGGTCAACCTTTAATATCCAACT, ins_12092:TCAGGGTGTGGGGGG

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

RdRp

  • RdRp:S6N
  • RdRp:A14D
  • RdRp:G15S
  • RdRp:S19T
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:I114V
  • RdRp:T163A
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206C
  • RdRp:K275R
  • RdRp:I279V
Deletions
N/A
Insertions
N/A

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