This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000042S.1

Display Name: LOC_000042S.1
S. Chinikar, S. M. Persson, M. Johansson, L. Bladh, M. Goya, B. Houshmand, A. Mirazimi, A. Plyusnin, A. Lundkvist, M. Nilsson & S. Shinikar

Sample details

Collection date (upper bound)
2003-09-09
Earliest release date
2003-09-09
Isolate name
756/02

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-28 16:26insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Swedish Institute for Infectious Disease Control, Centre for Microbiological Preparedness

INSDC

NCBI release date
2003-09-09
INSDC accession M

Alignment and QC metrics M

Length M
520
Total SNPs M
40
Total inserted nucs M
0
Total deleted nucs M
0
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
9.69%

Submission details

Submission ID
AY366382.1.M
Submitting group
Date submitted
2025-10-28 16:26:28 UTC
Date released
2025-10-28 16:27:00 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • M:A2923C
  • M:C2936T
  • M:T2940C
  • M:C2948T
  • M:G2954A
  • M:T2956G
  • M:C2972A
  • M:C2975T
  • M:T2987C
  • M:G2992A
  • M:A2993G
  • M:G2999A
  • M:C3014T
  • M:T3033G
  • M:A3053G
  • M:G3080A
  • M:A3091G
  • M:A3101T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:K944T
  • GPC:L955R
  • GPC:R967K
  • GPC:L981V
  • GPC:N1000S
  • GPC:K1038R
  • GPC:T1045I
  • GPC:A1046V
  • GPC:I1100V
    • Deletions
    None
    Insertions
    None

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