This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000042S.1

Display Name: LOC_000042S.1
G. D. Ebel, A. P. II Dupuis, K. Ngo, D. Nicholas, E. Kauffman, S. A. Jones, D. Young, J. Maffei, P.-Y. Shi, K. Bernard, L. D. Kramer & E. B. Kauffman

Submission details

Submission ID
AF346314.1
Submitting group
Date submitted
2025-07-11 18:50:54 UTC
Date released
2025-07-11 18:51:17 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-11 18:51insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Wadsworth Center, Infectious Disease

Alignment and QC metrics

Completeness
13.64%
Length
1504
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
3
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2001-06-16
Collection date (upper bound)
2001-06-16

INSDC

INSDC accession
NCBI release date
2001-06-16
NCBI update date
2016-07-23

Lineage

Lineage
1A

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C1465T
  • T1899C
  • C1974T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    env

  • env:L167F
    • Deletions
    None
    Insertions
    None

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