This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000040W.1

Display Name: Russia/LOC_000040W.1
R. Hewson, A. Gmyl, L. Gmyl, S. E. Smirnova, G. Karganova, B. Jamil, R. Hasan, J. Chamberlain, C. Clegg & S. E. Smironova

Submission details

Submission ID
AY573568.1.M/AY573567.1.S
Submitting group
Date submitted
2025-07-04 13:11:18 UTC
Date released
2025-07-04 13:11:41 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-04 13:11insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
HPA Porton Down, Special Pathogens

Alignment and QC metrics M

Completeness M
12.67%
Frame shifts M
GPC:1389-1685(nt:4255-5147)
Length M
433
Total ambiguous nucs M
0
Total deleted nucs M
247
Total frame shifts M
1
Total inserted nucs M
0
Total SNPs M
69
Total unknown nucs M
0

Alignment and QC metrics S

Completeness S
33.91%
Length S
568
Total ambiguous nucs S
0
Total deleted nucs S
16
Total frame shifts S
0
Total inserted nucs S
17
Total SNPs S
83
Total unknown nucs S
0

Sample details

Earliest release date
2004-10-02
Collection country
Russia
Collection date (upper bound)
2004-10-02

INSDC

INSDC accession M
INSDC accession S
NCBI release date
2004-10-02

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • M:A3608G
  • M:C3614T
  • M:T3632C
  • M:C3638T
  • M:T3662C
  • M:C3671T
  • M:T3692A
  • M:G3698A
  • M:C3707T
  • M:T3713C
  • M:T3716C
  • M:A3719G
  • M:T3720G
  • M:A3722G
  • M:G3728A
  • M:T3747C
  • M:T3749C
  • M:G3761A

    • S

  • S:G1090A
  • S:T1096A
  • S:T1099C
  • S:C1108T
  • S:G1117A
  • S:G1129A
  • S:C1147T
  • S:T1153C
  • S:T1174C
  • S:T1183C
  • S:C1189T
  • S:C1193T
  • S:T1195G
  • S:A1222T
  • S:G1234A
  • S:G1246T
  • S:T1261C
  • S:C1267T
    • Deletions
    M:4008-4254, S:1542-1547, S:1610-1619
    Insertions
    ins_S:1563:TATG, ins_S:1629:CTRTCTTTCA, ins_S:1577:A, ins_S:1566:AT

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:L1210V
  • GPC:Y1219H
  • GPC:R1284K
  • GPC:I1285V

    • NP

  • NP:N419S
  • NP:V436I
    • Deletions
    GPC:1306-1388
    Insertions
    None

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