This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00003X2.1

Display Name: Japan/LOC_00003X2.1
T. Munemura, M. Saikusa, C. Kawakami, H. Shimizu, M. Oseto, A. Hagiwara, H. Kimura & T. Miyamura

Sample details

Collection date (upper bound)
2002-09-18
Earliest release date
2002-09-18
Collection country
Japan
Isolate name
V-4185/EV71/Kanagawa/1983

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-01-13 13:00insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Department of Virology; 1-2-17 Takigashira, Isogo, Yokohama, Kanagawa 235-0012

INSDC

NCBI release date
2002-09-18
NCBI update date
2016-07-24
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
1038
Total SNPs
153
Total inserted nucs
6
Total deleted nucs
3
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
13.97%
Total stop codons
0

Submission details

Submission ID
AB081346.1
Submitting group
Date submitted
2026-01-13 13:00:38 UTC
Date released
2026-01-13 13:01:27 UTC

Genotype

Genotype
EV-A71

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • T138C
  • T142C
  • G145A
  • A148G
  • T149C
  • A150G
  • C156T
  • G157A
  • A159G
  • T162A
  • T174A
  • A180C
  • T207C
  • G208T
  • C209T
  • A210G
  • A212G
  • A228G
    • Deletions
    719-721
    Insertions
    ins_475:C, ins_729:GCT, ins_739:TA

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions

    VP2

  • VP2:N45D
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue