This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00003TA.1

Display Name: LOC_00003TA.1
D. S. Millar & J. R. Meruki

Sample details

Collection date (upper bound)
2010-03-18
Earliest release date
2010-03-18

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-28 16:26insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2010-03-18
INSDC accession L

Alignment and QC metrics L

Length L
12108
Total SNPs L
2353
Total inserted nucs L
0
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
100.00%

Submission details

Submission ID
FV537246.1.L
Submitting group
Date submitted
2025-10-28 16:26:28 UTC
Date released
2025-10-28 16:27:00 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:C2T
  • L:C4T
  • L:C13T
  • L:C17T
  • L:C18T
  • L:C19T
  • L:C20T
  • L:C21T
  • L:C22T
  • L:C27T
  • L:C28T
  • L:C29T
  • L:C31T
  • L:C37T
  • L:C39T
  • L:C46T
  • L:C48T
  • L:C59T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    RdRp

  • RdRp:L7F
  • RdRp:T10I
  • RdRp:Q11*
  • RdRp:A14V
  • RdRp:Q16*
  • RdRp:S19F
  • RdRp:P21F
  • RdRp:S26F
  • RdRp:R33W
  • RdRp:Q34*
  • RdRp:P35F
  • RdRp:H43Y
  • RdRp:A46V
  • RdRp:T49I
  • RdRp:P51F
  • RdRp:T54I
  • RdRp:H56Y
  • RdRp:S57L
    • Deletions
    None
    Insertions
    None

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