This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00003TA.1

Display Name: LOC_00003TA.1
J. H. Scherret, M. Poidinger, J. S. Mackenzie, A. K. Broom, V. Deubel, W. I. Lipkin, T. Briese, E. A. Gould & R. A. Hall

Sample details

Collection date (upper bound)
2000-12-26
Earliest release date
2000-12-26
Isolate name
OR205

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-16 15:04insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Queensland, Microbiology and Parasitology

INSDC

NCBI release date
2000-12-26
NCBI update date
2016-07-14
INSDC accession

Alignment and QC metrics

Length
633
Total SNPs
79
Total inserted nucs
1
Total deleted nucs
203
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
1
Frame shifts
NS5:813-817(nt:10116-10130)
Completeness
7.57%
Total stop codons
0

Submission details

Submission ID
AF297858.1
Submitting group
Date submitted
2026-02-16 15:03:30 UTC
Date released
2026-02-16 15:04:54 UTC

Lineage

Lineage
1B

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G9949A
  • C9955A
  • T9956A
  • G9958T
  • C9959A
  • G9963A
  • C9965G
  • T9967A
  • C10119T
  • G10126T
  • A10191G
  • T10197C
  • C10200T
  • C10203T
  • T10209C
  • A10212T
  • A10215C
  • A10221G
    • Deletions
    9970-10115, 10123, 10124, 10131-10171, 10478-10483, 10772-10779
    Insertions
    ins_10463:T

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS5

  • NS5:L729C
  • NS5:V730K
  • NS5:V731Y
  • NS5:P732K
  • NS5:A877S
    • Deletions
    NS5:734-812, NS5:818-831
    Insertions
    None

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