This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00003HW.1

Display Name: LOC_00003HW.1
J. H. Scherret, M. Poidinger, J. S. Mackenzie, A. K. Broom, V. Deubel, W. I. Lipkin, T. Briese, E. A. Gould & R. A. Hall

Submission details

Submission ID
AF297847.1
Submitting group
Date submitted
2025-07-11 18:50:54 UTC
Date released
2025-07-11 18:51:17 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-11 18:51insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Queensland, Microbiology and Parasitology

Alignment and QC metrics

Completeness
6.85%
Frame shifts
NS5:826-827(nt:10156-10161)
Length
593
Total ambiguous nucs
0
Total deleted nucs
164
Total frame shifts
1
Total inserted nucs
2
Total SNPs
72
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2000-12-26
Collection date (upper bound)
2000-12-26
Isolate name
Hu6774

INSDC

INSDC accession
NCBI release date
2000-12-26
NCBI update date
2016-07-14

Lineage

Lineage
1B

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G10163T
  • A10191G
  • T10197C
  • C10200T
  • C10203T
  • T10209C
  • A10212T
  • A10215G
  • A10221G
  • C10230T
  • A10263G
  • C10284T
  • G10287A
  • T10293C
  • G10309T
  • C10314A
  • C10317T
  • T10323C
    • Deletions
    10026-10155, 10478-10483, 10748-10775
    Insertions
    ins_10463:T, ins_10161:A

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS5

  • NS5:W828L
  • NS5:A877S
  • NS5:L891W
    • Deletions
    None
    Insertions
    None

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