This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00003E3.1

Display Name: LOC_00003E3.1
J. H. Scherret, M. Poidinger, J. S. Mackenzie, A. K. Broom, V. Deubel, W. I. Lipkin, T. Briese, E. A. Gould & R. A. Hall

Sample details

Collection date (upper bound)
2000-12-26
Earliest release date
2000-12-26
Isolate name
CH16549E

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-20 15:58insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Queensland, Microbiology and Parasitology

INSDC

NCBI release date
2000-12-26
NCBI update date
2016-07-14
INSDC accession

Alignment and QC metrics

Length
601
Total SNPs
75
Total inserted nucs
3
Total deleted nucs
8
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
5.49%
Total stop codons
0

Submission details

Submission ID
AF297844.1
Submitting group
Date submitted
2025-10-20 15:58:24 UTC
Date released
2025-10-20 16:00:00 UTC

Lineage

Lineage
1B

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A10170G
  • A10175C
  • A10182T
  • A10191G
  • T10197C
  • C10200T
  • C10203T
  • T10209C
  • A10212T
  • A10215C
  • A10221G
  • C10230T
  • A10263G
  • A10279G
  • C10284T
  • G10287A
  • T10293C
  • G10309T
    • Deletions
    10464-10471
    Insertions
    ins_10483:AGT

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS5

  • NS5:K832T
  • NS5:N867D
  • NS5:A877S
  • NS5:D896Y
    • Deletions
    None
    Insertions
    None

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