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West Nile Virus
Crimean-Congo Hemorrhagic Fever Virus
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Ebola Sudan
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West Nile Virus
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LOC_00003B9.1
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Display Name: LOC_00003B9.1
J. H. Scherret,
M. Poidinger,
J. S. Mackenzie,
A. K. Broom,
V. Deubel,
W. I. Lipkin,
T. Briese,
E. A. Gould &
R. A. Hall
Submission details
Submission ID
AF297841.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-07-11 18:50:54 UTC
Date released
2025-07-11 18:51:17 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-07-11 18:51
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
University of Queensland, Microbiology and Parasitology
Alignment and QC metrics
Completeness
5.55%
Length
607
Total ambiguous nucs
0
Total deleted nucs
6
Total frame shifts
0
Total inserted nucs
1
Total SNPs
68
Total stop codons
0
Total unknown nucs
0
Sample details
Earliest release date
2000-12-26
Collection date (upper bound)
2000-12-26
Isolate name
CH16465C
INSDC
INSDC accession
AF297841.1
NCBI release date
2000-12-26
NCBI update date
2016-07-14
Lineage
Lineage
1B
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
A
10149
T
G
10155
A
A
10170
G
A
10191
G
T
10197
C
C
10200
T
C
10203
T
T
10209
C
A
10212
T
A
10215
C
A
10221
G
C
10230
T
A
10263
G
C
10284
T
G
10287
A
T
10293
C
G
10309
T
C
10314
A
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Deletions
10478-10483
Insertions
ins_10463:T
Amino acid mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
NS5
NS5:
A
877
S
Deletions
None
Insertions
None
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