This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00002U9.1

Display Name: USA/LOC_00002U9.1
J. F. Anderson, T. G. Andreadis, C. R. Vossbrinck, S. Tirrell, E. M. Wakem, R. A. French, A. E. Garmendia & H. J. Van Kruiningen

Submission details

Submission ID
AF206518.2
Submitting group
Date submitted
2025-07-11 18:50:54 UTC
Date released
2025-07-11 18:51:17 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-11 18:51insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Connecticut Agricultural Experiment Station, Soil and Water

Alignment and QC metrics

Completeness
99.51%
Length
10975
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
15
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
1999-12-28
Collection subdivision level 1
Connecticut, Greenwich-Stanford town line
Collection country
USA
Collection date (upper bound)
1999-12-28
Isolate name
2741

Host

Host name scientific
Culex pipiens
Host taxon id

INSDC

INSDC accession
NCBI release date
1999-12-28
NCBI update date
2000-05-08

Lineage

Lineage
1A

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • C687T
  • T825C
  • C1465T
  • G1482A
  • G2056A
  • C3810T
  • C4107T
  • G5280A
  • G5930C
  • T6405C
  • T8235C
  • T8451C
  • C10338T
  • C10408T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS3

  • NS3:G440A

    • env

  • env:L167F
  • env:V364M
    • Deletions
    None
    Insertions
    None

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