This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00002U9.1

Display Name: USA/LOC_00002U9.1
J. F. Anderson, T. G. Andreadis, C. R. Vossbrinck, S. Tirrell, E. M. Wakem, R. A. French, A. E. Garmendia & H. J. Van Kruiningen

Sample details

Collection date (upper bound)
1999-12-28
Earliest release date
1999-12-28
Collection country
USA
Collection subdivision level 1
Connecticut, Greenwich-Stanford town line
Isolate name
2741

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-04 14:34insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Connecticut Agricultural Experiment Station, Soil and Water

INSDC

NCBI release date
1999-12-28
NCBI update date
2000-05-08
INSDC accession

Host

Host taxon id
Host name scientific
Culex pipiens

Alignment and QC metrics

Length
10975
Total SNPs
15
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
99.51%
Total stop codons
0

Submission details

Submission ID
AF206518.2
Submitting group
Date submitted
2025-11-04 14:34:19 UTC
Date released
2025-11-04 14:39:17 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • C687T
  • T825C
  • C1465T
  • G1482A
  • G2056A
  • C3810T
  • C4107T
  • G5280A
  • G5930C
  • T6405C
  • T8235C
  • T8451C
  • C10338T
  • C10408T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS3

  • NS3:G440A

    • env

  • env:L167F
  • env:V364M
    • Deletions
    None
    Insertions
    None

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