This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00002PK.1

Display Name: LOC_00002PK.1
X. Y. Jia, T. Briese, I. Jordan, A. Rambaut, H. C. Chi, J. S. Mackenzie, R. A. Hall, J. Scherret, W. I. Lipkin & X.-Y. Jia

Sample details

Collection date (upper bound)
1999-12-14
Earliest release date
1999-12-14

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-04 14:34insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Univ. California, Irvine, Microbiology

INSDC

NCBI release date
1999-12-14
NCBI update date
2016-07-26
INSDC accession

Alignment and QC metrics

Length
917
Total SNPs
151
Total inserted nucs
33
Total deleted nucs
13
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
8.13%
Total stop codons
0

Submission details

Submission ID
AF208017.1
Submitting group
Date submitted
2025-11-04 14:34:19 UTC
Date released
2025-11-04 14:39:17 UTC

Lineage

Lineage
2

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T9987G
  • G9990T
  • C9993T
  • A10000C
  • A10002T
  • C10012A
  • G10014A
  • C10015T
  • C10017G
  • T10032C
  • C10035T
  • C10044G
  • G10050C
  • T10053C
  • C10059T
  • T10062C
  • C10065A
  • A10068G
    • Deletions
    10421, 10467-10470, 10487-10494
    Insertions
    ins_10408:TGTATTGAGT, ins_10417:GTTGTAGTGTTCA, ins_10427:G, ins_10452:AGA, ins_10461:AG, ins_10483:GAT, ins_10501:T

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS5

  • NS5:G805K
  • NS5:E816A
  • NS5:K837R
  • NS5:A860T
  • NS5:Q869H
  • NS5:A877S
  • NS5:I878V
  • NS5:D881E
  • NS5:K892R
  • NS5:T898I
  • NS5:L899V
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue