This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00002HX.1

Display Name: Romania/LOC_00002HX.1
R. S. Lanciotti, J. T. Roehrig, V. Deubel, J. Smith, M. Parker, K. Steele, B. Crise, K. E. Volpe, M. B. Crabtree, J. H. Scherret, R. A. Hall, J. S. MacKenzie, C. B. Cropp, B. Panigrahy, E. Ostlund, B. Schmitt, M. Malkinson, C. Banet, J. Weissman, N. Komar, H. M. Savage, W. Stone, T. McNamara & D. J. Gubler

Sample details

Collection date (upper bound)
2000-01-12
Earliest release date
2000-01-12
Collection country
Romania
Isolate name
ROM96(0334)

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-01-30 16:03insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Institut Pasteur-Paris, Unite des Arbovirus et Virus des Fievres Hemorragiques

INSDC

NCBI release date
2000-01-12
NCBI update date
2016-07-26
INSDC accession

Alignment and QC metrics

Length
227
Total SNPs
12
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
2.06%
Total stop codons
0

Submission details

Submission ID
AF205879.1
Submitting group
Date submitted
2026-01-30 16:03:34 UTC
Date released
2026-01-30 16:04:14 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T1407C
  • C1422T
  • C1433T
  • G1441A
  • A1446G
  • C1465T
  • G1503A
  • A1512G
  • A1527G
  • G1545A
  • T1584C
  • C1620T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    env

  • env:S156F
  • env:V159I
  • env:L167F
    • Deletions
    None
    Insertions
    None

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