This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00002HX.1

Display Name: USA/LOC_00002HX.1
R. S. Lanciotti, J. T. Roehrig, V. Deubel, J. Smith, M. Parker, K. Steele, B. Crise, K. E. Volpe, M. B. Crabtree, J. H. Scherret, R. A. Hall, J. S. MacKenzie, C. B. Cropp, B. Panigrahy, E. Ostlund, B. Schmitt, M. Malkinson, C. Banet, J. Weissman, N. Komar, H. M. Savage, W. Stone, T. McNamara, D. J. Gubler, R. Lanciotti, J. Roehrig & K. Volpe

Sample details

Collection date (upper bound)
1999-12-27
Earliest release date
1999-12-27
Collection country
USA
Collection subdivision level 1
New York

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-20 15:58insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Centers for Disease Control and Prevention, Division of Vector-Borne Diseases

INSDC

NCBI release date
1999-12-27
NCBI update date
2000-12-07
INSDC accession

Alignment and QC metrics

Length
11029
Total SNPs
10
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
100.00%
Total stop codons
0

Submission details

Submission ID
AF196835.2
Submitting group
Date submitted
2025-10-20 15:58:24 UTC
Date released
2025-10-20 16:00:00 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • C1465T
  • C4107T
  • G5280A
  • T6405C
  • C7015T
  • T8235C
  • C8811T
  • C10338T
  • G10851A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    env

  • env:L167F
    • Deletions
    None
    Insertions
    None

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