This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00002F2.1

USA/NY99-flamingo382-99/unknown
R. S. Lanciotti, J. T. Roehrig, V. Deubel, J. Smith, M. Parker, K. Steele, B. Crise, K. E. Volpe, M. B. Crabtree, J. H. Scherret, R. A. Hall, J. S. MacKenzie, C. B. Cropp, B. Panigrahy, E. Ostlund, B. Schmitt, M. Malkinson, C. Banet, J. Weissman, N. Komar, H. M. Savage, W. Stone, T. McNamara, D. J. Gubler, R. Lanciotti, J. Roehrig & K. Volpe

Centers for Disease Control and Prevention, Division of Vector-Borne Diseases

Sample details

Earliest release date
1999-12-27
Sampling location
USA (New York)
Isolate name
NY99-flamingo382-99

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-21 21:23insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
1999-12-27
NCBI update date
2000-12-07
INSDC accession

Submission details

Submission ID
AF196835.2
Submitting group
Date submitted
2026-03-21 21:23:04 UTC
Date released
2026-03-21 21:24:20 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
10
Length
11029 (100%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159V
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • C1465T
  • C4107T
  • G5280A
  • T6405C
  • C7015T
  • T8235C
  • C8811T
  • C10338T
  • G10851A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

env

  • env:L167F
Deletions
N/A
Insertions
N/A

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