This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00002D6.1

unknown/HB6343/unknown
J. H. Scherret, M. Poidinger, J. S. Mackenzie, A. K. Broom, V. Deubel, W. I. Lipkin, T. Briese, E. A. Gould & R. A. Hall

University of Queensland, Department of Microbiology and Parasitology

Sample details

Earliest release date
2001-10-03
Isolate name
HB6343

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-15 20:25insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2001-10-03
NCBI update date
2016-07-26
INSDC accession

Submission details

Submission ID
AF196542.1
Submitting group
Date submitted
2026-03-15 20:25:05 UTC
Date released
2026-03-15 20:26:32 UTC

Lineage

Lineage
1A

Files

annotations

Alignment and QC

Total SNPs
27
Total inserted nucs
1
Total deleted nucs
1
Total frame shifts
1
Frame shifts
NS5:821-905(nt:10139-10395)
Length
670 (6.07%)
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T10143C
  • T10209C
  • A10221G
  • C10317T
  • T10323C
  • C10338T
  • T10374C
  • C10393T
  • G10398A
  • T10402C
  • A10405T
  • T10431C
  • C10435T
  • T10437C
  • G10444A
  • T10448G
  • A10457G
  • T10459C
Deletions

10138
Insertions

ins_10463:T

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
N/A
Deletions

NS5

NS5:820
Insertions
N/A

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