This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00002D6.1

Nigeria/LOC_00002D6.1
R. Hewson, A. Gmyl, L. Gmyl, S. E. Smirnova, G. Karganova, B. Jamil, R. Hasan, J. Chamberlain & C. Clegg

Hewson R., Special Pathogens, Health Protection Agency, CAMR, Salisbury, SP4 0JG

Sample details

Earliest release date
2004-10-01
Sampling location
Nigeria
Isolate name
IbAr10200

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-22 00:11insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2004-10-01
INSDC accession L

Submission details

Submission ID
AJ620682.1.L
Submitting group
Date submitted
2026-05-22 00:11:19 UTC
Date released
2026-05-22 00:12:07 UTC

Files

Annotations

Alignment and QC

Total SNPs L
8
Total ambiguous nucs L
3
Length L
1007 (8.29%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • T11016G
  • T11017G
  • T11020C
  • A11021G
  • A11024T
  • T11025C
  • G11027C
  • C11029A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

RdRp

  • RdRp:N3649D
  • RdRp:I3650S
  • RdRp:D3651Q
Deletions
N/A
Insertions
N/A

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