This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00002D6.1

LOC_00002D6.1
Q. Tang, D. Gao, L. Han, X. Zhao & X. Tao

Chinese Academy of Preventive Medicine (CAPM), Institute of Epidemiology and Microbiology

Sample details

Earliest release date
2001-04-17
Isolate name
88166

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-12 21:08insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2001-04-17
INSDC accession S segment

Submission details

Submission ID
AY029157.1.S
Submitting group
Date submitted
2026-06-12 21:07:57 UTC
Date released
2026-06-12 21:09:43 UTC

Clade & Lineage

Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
222
Total inserted nucs S segment
17
Total deleted nucs S segment
2
Length S segment
1672 (91.7%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • T16A
  • C31G
  • T32C
  • G34A
  • A45G
  • C48T
  • G75A
  • A84G
  • A98T
  • A102G
  • C123T
  • C126T
  • T141C
  • C150T
  • T166C
  • C171A
  • A173G
  • C183T
Deletions

S segment

1596, 1597
Insertions

S segment

ins_0:TCTCAAAGAAACACGT, ins_1514:T

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:Y20F
  • NP:D44E
  • NP:K45R
  • NP:D116E
  • NP:N150H
  • NP:Q179L
  • NP:D199E
  • NP:R270K
  • NP:S275N
  • NP:R428K
Deletions
N/A
Insertions
N/A

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