This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000029E.1

Display Name: LOC_000029E.1
X. Y. Jia, T. Briese, I. Jordan, A. Rambaut, H. C. Chi, J. S. Mackenzie, R. A. Hall, J. Scherret, W. I. Lipkin, J. H. Scherret, M. Poidinger, A. K. Broom, V. Deubel & E. A. Gould

Sample details

Collection date (upper bound)
2001-01-07
Earliest release date
2001-01-07
Isolate name
G2266

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-04 14:34insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Queensland, Department of Microbiology and Parasitology

INSDC

NCBI release date
2001-01-07
NCBI update date
2016-07-14
INSDC accession

Alignment and QC metrics

Length
664
Total SNPs
95
Total inserted nucs
19
Total deleted nucs
51
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
1
Frame shifts
NS5:821-905(nt:10139-10395)
Completeness
6.31%
Total stop codons
0

Submission details

Submission ID
AF196537.1
Submitting group
Date submitted
2025-11-04 14:34:19 UTC
Date released
2025-11-04 14:39:17 UTC

Lineage

Lineage
5

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C10131G
  • T10140C
  • T10143C
  • A10149T
  • G10152A
  • G10155A
  • A10176G
  • C10179T
  • G10185T
  • A10190G
  • C10203G
  • T10209C
  • A10215C
  • A10218G
  • A10221T
  • G10224A
  • C10239G
  • G10245C
    • Deletions
    10138, 10393-10410, 10466-10469, 10479-10487, 10715-10717, 10803-10818
    Insertions
    ins_10420:TA, ins_10440:GATT, ins_10448:GAATAGGA, ins_10450:AGC, ins_10457:T, ins_10499:A

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions
    Deletions
    NS5:820
    Insertions
    None

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