This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000028G.1

Display Name: LOC_000028G.1
J. H. Scherret, M. Poidinger, J. S. Mackenzie, A. K. Broom, V. Deubel, W. I. Lipkin, T. Briese, E. A. Gould & R. A. Hall

Submission details

Submission ID
AF196536.1
Submitting group
Date submitted
2025-07-11 18:50:54 UTC
Date released
2025-07-11 18:51:17 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-11 18:51insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Queensland, Department of Microbiology and Parasitology

Alignment and QC metrics

Completeness
6.58%
Frame shifts
NS5:820-905(nt:10138-10395)
Length
659
Total ambiguous nucs
0
Total deleted nucs
68
Total frame shifts
1
Total inserted nucs
1
Total SNPs
27
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2001-10-03
Collection date (upper bound)
2001-10-03
Isolate name
ArA1Dj

INSDC

INSDC accession
NCBI release date
2001-10-03
NCBI update date
2016-07-26

Lineage

Lineage
1A

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T10143C
  • A10154T
  • G10155A
  • T10158C
  • G10171C
  • T10209C
  • C10243T
  • C10317T
  • C10393T
  • G10398A
  • T10402C
  • A10405T
  • C10408T
  • T10431C
  • C10435T
  • A10438G
  • G10444A
  • T10459C
    • Deletions
    10070-10137
    Insertions
    ins_10463:T

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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