This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000023S.1

Display Name: Uzbekistan/LOC_000023S.1
R. Hewson, A. Gmyl, L. Gmyl, S. E. Smirnova, G. Karganova, B. Jamil, R. Hasan, J. Chamberlain & C. Clegg

Submission details

Submission ID
AJ620685.1.L
Submitting group
Date submitted
2025-07-04 13:11:18 UTC
Date released
2025-07-04 13:11:41 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-04 13:11insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Hewson R., Special Pathogens, Health Protection Agency, CAMR, Salisbury, SP4 0JG

Alignment and QC metrics L

Completeness L
8.63%
Length L
1009
Total ambiguous nucs L
0
Total deleted nucs L
45
Total frame shifts L
0
Total inserted nucs L
9
Total SNPs L
138
Total unknown nucs L
0

Sample details

Earliest release date
2004-10-01
Collection country
Uzbekistan
Collection date (upper bound)
2004-10-01
Isolate name
Hodzha

INSDC

INSDC accession L
NCBI release date
2004-10-01

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:T11020C
  • L:C11023T
  • L:A11050G
  • L:T11054C
  • L:A11056G
  • L:T11080C
  • L:A11083G
  • L:A11084G
  • L:C11086T
  • L:C11089T
  • L:T11095C
  • L:T11098C
  • L:A11101C
  • L:C11107T
  • L:G11113A
  • L:G11122A
  • L:C11125T
  • L:C11128T
    • Deletions
    L:11930, L:11931, L:11974-11978, L:12013-12050
    Insertions
    ins_L:11991:TCCG, ins_L:11987:T, ins_L:11924:GTG, ins_L:11922:T

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    RdRp

  • RdRp:S3670G
  • RdRp:S3741N
  • RdRp:I3760V
  • RdRp:R3766K
  • RdRp:V3789I
  • RdRp:P3799S
  • RdRp:S3801P
  • RdRp:M3806I
  • RdRp:N3812S
  • RdRp:K3836R
  • RdRp:F3840L
  • RdRp:A3856T
  • RdRp:E3875D
  • RdRp:I3884V
  • RdRp:A3896T
  • RdRp:Q3899P
  • RdRp:F3900T
  • RdRp:V3901A
    • Deletions
    None
    Insertions
    None

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