This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000021W.1

Display Name: Russia/LOC_000021W.1
R. Hewson, A. Gmyl, L. Gmyl, S. E. Smirnova, G. Karganova, B. Jamil, R. Hasan, J. Chamberlain & C. Clegg

Submission details

Submission ID
AJ620683.1.L
Submitting group
Date submitted
2025-07-04 13:11:18 UTC
Date released
2025-07-04 13:11:41 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-04 13:11insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Hewson R., Special Pathogens, Health Protection Agency, CAMR, Salisbury, SP4 0JG

Alignment and QC metrics L

Completeness L
9.13%
Frame shifts L
RdRp:3633-3946(nt:10973-11914)
Length L
980
Total ambiguous nucs L
0
Total deleted nucs L
128
Total frame shifts L
1
Total inserted nucs L
2
Total SNPs L
125
Total unknown nucs L
0

Sample details

Earliest release date
2004-10-01
Collection country
Russia
Collection date (upper bound)
2004-10-01
Isolate name
K229-243

INSDC

INSDC accession L
NCBI release date
2004-10-01

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:T10967G
  • L:A10975C
  • L:G10976T
  • L:T10977C
  • L:G11038A
  • L:A11056G
  • L:C11077T
  • L:A11083G
  • L:T11095C
  • L:T11098C
  • L:A11101T
  • L:C11107T
  • L:T11117C
  • L:G11122A
  • L:T11131C
  • L:C11134T
  • L:T11149C
  • L:T11168C
    • Deletions
    L:10972, L:10982-11029, L:11972-12000, L:12011-12032, L:12038-12065
    Insertions
    ins_L:11928:CG

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions
    Deletions
    None
    Insertions
    None

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