This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000021W.1

Display Name: LOC_000021W.1
J. H. Scherret, M. Poidinger, J. S. Mackenzie, A. K. Broom, V. Deubel, W. I. Lipkin, T. Briese, E. A. Gould, R. A. Hall & A. Broom

Sample details

Collection date (upper bound)
2001-10-04
Earliest release date
2001-10-04

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-04 14:34insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Queensland, Department of Microbiology and Parasitology

INSDC

NCBI release date
2001-10-04
NCBI update date
2016-07-26
INSDC accession

Alignment and QC metrics

Length
417
Total SNPs
23
Total inserted nucs
0
Total deleted nucs
55
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
1
Frame shifts
env:92-501(nt:1238-2469)
Completeness
4.28%
Total stop codons
0

Submission details

Submission ID
AF196529.1
Submitting group
Date submitted
2025-11-04 14:34:19 UTC
Date released
2025-11-04 14:39:17 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A1179T
  • G1183T
  • C1260T
  • G1271C
  • C1272A
  • A1274C
  • C1275T
  • T1332C
  • T1343C
  • C1356A
  • T1357C
  • C1386T
  • T1389C
  • T1407C
  • C1422T
  • T1432C
  • G1441A
  • C1465T
    • Deletions
    1186-1237, 1642-1644
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    env

  • env:L62N
  • env:T64S
    • Deletions
    env:74-91
    Insertions
    None

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