This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00001X4.1

LOC_00001X4.1
Q. Tang, D. Gao, L. Han, X. Zhao & X. Tao

Chinese Academy of Preventive Medicine (CAPM), Institute of Epidemiology and Microbiology

Sample details

Earliest release date
2001-04-17
Isolate name
88166

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2001-04-17
INSDC accession S

Submission details

Submission ID
AY029157.1.S
Submitting group
Date submitted
2026-08-19 19:21:33 UTC
Date released
2026-08-19 19:22:38 UTC

Lineage

Segment S Lineage
IV.2

Files

Annotations

Alignment and QC

Total SNPs S
216
Total inserted nucs S
2
Total deleted nucs S
2
Length S
1672 (100%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • T48C
  • G54A
  • A61G
  • C64T
  • G67A
  • G91A
  • G99A
  • A118G
  • C139T
  • C142T
  • T157C
  • C166T
  • C178A
  • T182C
  • C187A
  • T223C
  • G229A
  • C235T
Deletions

S

1611, 1612
Insertions

S

ins_1530:T, ins_1577:A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:R15K
  • NP:D44E
  • NP:D116E
  • NP:T124A
  • NP:G125N
  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:S275N
  • NP:S301G
  • NP:V436I
Deletions
N/A
Insertions
N/A

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