This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00001X4.1

Display Name: LOC_00001X4.1
R. S. Lanciotti, J. T. Roehrig, V. Deubel, J. Smith, M. Parker, K. Steele, B. Crise, K. E. Volpe, M. B. Crabtree, J. H. Scherret, R. A. Hall, J. S. MacKenzie, C. B. Cropp, B. Panigrahy, E. Ostlund, B. Schmitt, M. Malkinson, C. Banet, J. Weissman, N. Komar, H. M. Savage, W. Stone, T. McNamara, D. J. Gubler, ..., A. Broom

Sample details

Collection date (upper bound)
2001-01-16
Earliest release date
2001-01-16

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-04 14:34insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Queensland, Department of Microbiology and Parasitology

INSDC

NCBI release date
2001-01-16
NCBI update date
2016-07-14
INSDC accession

Alignment and QC metrics

Length
496
Total SNPs
101
Total inserted nucs
1
Total deleted nucs
210
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
1
Frame shifts
env:234-501(nt:1665-2469)
Completeness
6.39%
Total stop codons
0

Submission details

Submission ID
AF196525.1
Submitting group
Date submitted
2025-11-04 14:34:19 UTC
Date released
2025-11-04 14:39:17 UTC

Lineage

Lineage
5

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A1214C
  • A1218G
  • T1221G
  • C1228T
  • T1233G
  • T1235A
  • C1242T
  • G1244A
  • A1245G
  • A1248G
  • A1251C
  • G1254T
  • G1263A
  • C1272A
  • C1275T
  • C1278A
  • C1281T
  • C1285T
    • Deletions
    1663, 1664, 1701-1908
    Insertions
    ins_1686:G

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    env

  • env:D83A
  • env:P88S
  • env:F90Y
  • env:R93K
  • env:K118R
  • env:I126T
  • env:N154S
  • env:V159Q
  • env:L167F
  • env:G229E
  • env:S230A
    • Deletions
    env:233
    Insertions
    None

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