This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
unknown/G22886/unknown
R. S. Lanciotti, J. T. Roehrig, V. Deubel, J. Smith, M. Parker, K. Steele, B. Crise, K. E. Volpe, M. B. Crabtree, J. H. Scherret, R. A. Hall, J. S. MacKenzie, C. B. Cropp, B. Panigrahy, E. Ostlund, B. Schmitt, M. Malkinson, C. Banet, J. Weissman, N. Komar, H. M. Savage, W. Stone, T. McNamara, D. J. Gubler, ..., A. Broom

University of Queensland, Department of Microbiology and Parasitology

Sample details

Earliest release date
2001-01-16
Isolate name
G22886

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2001-01-16
NCBI update date
2016-07-14
INSDC accession

Submission details

Submission ID
AF196524.1
Date submitted
2026-03-21 21:23:04 UTC
Date released
2026-03-21 21:24:20 UTC

Lineage

Lineage
5

Files


Alignment and QC

Total SNPs
103
Total inserted nucs
1
Total deleted nucs
210
Total frame shifts
1
Frame shifts
env:234-501(nt:1665-2469)
Length
496 (6.39%)
Amino Acid Mutations from founder clade
  • env:S156A
  • env:T208K
  • env:H214Q
  • env:R215T
  • env:N222Y
  • env:S227N
  • env:G229E
  • env:G230A
  • env:N231T
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A1218G
  • T1221G
  • C1228T
  • T1233G
  • T1235A
  • G1244A
  • A1245G
  • A1251C
  • G1254T
  • G1263A
  • C1266T
  • C1272A
  • C1275T
  • C1278A
  • C1281T
  • C1285T
  • C1293A
  • C1302T
Deletions

1663, 1664, 1701-1908
Insertions

ins_1686:G

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

env

  • env:P88S
  • env:F90Y
  • env:R93K
  • env:K118R
  • env:I126T
  • env:S156A
  • env:V159Q
  • env:L167F
  • env:T208K
  • env:H214Q
  • env:R215T
  • env:N222Y
  • env:S227N
  • env:G229E
  • env:S230A
Deletions

env

env:233
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue