This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00001PL.1

unknown/OR354/unknown
J. H. Scherret, M. Poidinger, J. S. Mackenzie, A. K. Broom, V. Deubel, W. I. Lipkin, T. Briese, E. A. Gould, R. A. Hall & A. Broom

University of Queensland, Department of Microbiology and Parasitology

Sample details

Earliest release date
2001-10-04
Isolate name
OR354

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-21 21:23insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2001-10-04
NCBI update date
2016-07-26
INSDC accession

Submission details

Submission ID
AF196518.1
Submitting group
Date submitted
2026-03-21 21:23:04 UTC
Date released
2026-03-21 21:24:20 UTC

Lineage

Lineage
1B

Files

Annotations

Alignment and QC

Total SNPs
73
Total deleted nucs
1
Total frame shifts
1
Frame shifts
env:243-501(nt:1691-2469)
Length
484 (4.4%)
Amino Acid Mutations from founder clade
  • env:S156F
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A1218G
  • T1221G
  • G1231T
  • G1244A
  • A1245G
  • A1251G
  • G1254A
  • C1260T
  • G1263A
  • C1266T
  • C1275T
  • C1278G
  • A1287T
  • C1293T
  • T1305C
  • C1329T
  • T1332A
  • T1343C
Deletions

1690
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

env

  • env:A89S
  • env:R93K
  • env:I126T
  • env:S156F
  • env:V159T
  • env:T162A
  • env:L167F
  • env:N199S
  • env:G229E
  • env:T231N
Deletions

env

env:242
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue