This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00001MQ.1

Display Name: LOC_00001MQ.1
R. S. Lanciotti, J. T. Roehrig, V. Deubel, J. Smith, M. Parker, K. Steele, B. Crise, K. E. Volpe, M. B. Crabtree, J. H. Scherret, R. A. Hall, J. S. MacKenzie, C. B. Cropp, B. Panigrahy, E. Ostlund, B. Schmitt, M. Malkinson, C. Banet, J. Weissman, N. Komar, H. M. Savage, W. Stone, T. McNamara, D. J. Gubler, ...; A. Broom

Submission details

Submission ID
AF196515.1
Submitting group
Date submitted
2025-07-11 18:50:54 UTC
Date released
2025-07-11 18:51:17 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-11 18:51insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Queensland, Department of Microbiology and Parasitology

Alignment and QC metrics

Completeness
4.52%
Length
498
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
72
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2001-01-17
Collection date (upper bound)
2001-01-17

INSDC

INSDC accession
NCBI release date
2001-01-17
NCBI update date
2016-07-14

Lineage

Lineage
1B

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A1218G
  • T1221G
  • G1231T
  • G1244A
  • A1245G
  • A1251G
  • G1254A
  • C1260T
  • G1263A
  • C1266T
  • C1275T
  • C1278G
  • A1287T
  • C1293T
  • T1305C
  • C1329T
  • T1332A
  • T1343C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    env

  • env:A89S
  • env:R93K
  • env:I126T
  • env:S156F
  • env:V159T
  • env:T162A
  • env:L167F
  • env:N199S
  • env:G229E
  • env:T231N
    • Deletions
    None
    Insertions
    None

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