This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00001AD.1

Display Name: LOC_00001AD.1
J. H. Scherret, M. Poidinger, J. S. Mackenzie, A. K. Broom, V. Deubel, W. I. Lipkin, T. Briese, E. A. Gould, R. A. Hall & A. Broom

Sample details

Collection date (upper bound)
2001-10-04
Earliest release date
2001-10-04

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-01 16:19insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Queensland, Department of Microbiology and Parasitology

INSDC

NCBI release date
2001-10-04
NCBI update date
2016-07-26
INSDC accession

Alignment and QC metrics

Length
500
Total SNPs
74
Total inserted nucs
1
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
1
Frame shifts
env:246-501(nt:1702-2469)
Completeness
4.52%
Total stop codons
0

Submission details

Submission ID
AF196505.1
Submitting group
Date submitted
2025-12-01 16:19:04 UTC
Date released
2025-12-01 16:20:14 UTC

Lineage

Lineage
1B

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A1218G
  • T1221G
  • G1231T
  • G1244A
  • G1254A
  • C1260T
  • G1263A
  • C1266T
  • C1275T
  • C1278G
  • A1287T
  • C1293T
  • T1305C
  • C1329T
  • T1332A
  • A1333G
  • T1343C
  • A1344G
    • Deletions
    None
    Insertions
    ins_1701:C

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    env

  • env:A89S
  • env:R93K
  • env:T123A
  • env:I126T
  • env:S156F
  • env:T157M
  • env:V159T
  • env:T162A
  • env:L167F
  • env:N199S
  • env:G229E
  • env:T231N
  • env:E241K
  • env:E244Q
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue