This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001JB2F.1

Turkey/LOC_001JB2F.1/2020-04-04
Q. Lin, N. Elaldi, M. Yigit, B. Yildiz, R. Hewson, M. Lopez-Garcia, G. Lythe, A. N. Pektas, B. Koksal, T. N. Tasseten, A. Deniz, H. Bedir, Y. Cakir Kiymaz, Z. Vatansever, C. Molina-Paris & T. Leitner

Kafkas University, Department of Parasitology

Sample details

Collection date
2020-04-04
Earliest release date
2026-04-19
Sampling location
Turkey (Sivas, Zara)
Isolate name
TRSCU/RP9/Zara/2020

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2026-04-19
INSDC accession L segment

Host

Host

Submission details

Submission ID
PX875039.1.L
Submitting group
Date submitted
2026-07-20 10:41:01 UTC
Date released
2026-07-20 10:45:33 UTC

Clade & Lineage

Closest reference L segment
singleReference (variant)

Files

Annotations

Alignment and QC

Total SNPs L segment
1289
Total inserted nucs L segment
29
Total ambiguous nucs L segment
1
Length L segment
12048 (99.3%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 reference

Substitutions

L segment

  • A91G
  • G93A
  • C100T
  • A109G
  • T131A
  • C148T
  • T151C
  • T154C
  • T160C
  • T163C
  • T202C
  • T229C
  • A240C
  • T253C
  • T254A
  • G264A
  • C265T
  • A268G
Deletions
N/A
Insertions

L segment

ins_11924:G, ins_12085:TT, ins_12108:TTATTTGAAGGGTGTGGGGGGAACGA

Amino acid substitutions

Substitutions called relative to the NC_005301.3 reference

Substitutions

RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:D55A
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67L
  • RdRp:R80K
  • RdRp:T120S
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:I176M
  • RdRp:A202V
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K218R
  • RdRp:K275R
  • RdRp:I279V
  • RdRp:V352I
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue