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LOC_001J6ND.1
Download
Download FASTA
Download metadata TSV
Tajikistan/LOC_001J6ND.1/2017-06-23
J. D'Addiego,
M. Mullojanova,
T. Hikmatov,
F. Tishkova &
R. Hewson
UK Health Security Agency, Research & Evaluation
Sample details
Collection date
2017-06-23
Earliest release date
2025-07-27
Sampling location
Tajikistan
Isolate name
CCHFV_C12
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2025-07-27
INSDC accession L segment
PV953845.1
INSDC accession M segment
PV953844.1
INSDC accession S segment
PV953843.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
PV953845.1.L/PV953844.1.M/PV953843.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-07-20 10:41:01 UTC
Date released
2026-07-20 10:45:33 UTC
Clade & Lineage
Closest reference L segment
singleReference (variant)
Closest reference M segment
M (MH396653.1) (variant)
Closest reference S segment
S1 (OL774851.1) (variant)
Files
Annotations
LOC_001J6ND.1.embl
Alignment and QC
Total SNPs L segment
1597
Total inserted nucs L segment
41
Total deleted nucs L segment
1
Total ambiguous nucs L segment
28
Total unknown nucs L segment
2
Length L segment
12125 (99.6%)
Total SNPs M segment
745
Total inserted nucs M segment
1
Total ambiguous nucs M segment
6
Total unknown nucs M segment
259
Length M segment
4705 (81.3%)
Total SNPs S segment
183
Total ambiguous nucs S segment
6
Length S segment
1249 (68.8%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L segment
A
35
G
G
43
C
C
48
T
T
49
C
A
53
G
C
59
T
T
62
C
C
64
T
T
65
G
G
71
T
A
72
C
C
85
T
G
93
A
A
109
G
G
112
A
T
121
C
T
131
A
C
136
T
Show more
M segment
G
535
A
T
538
G
G
547
C
C
551
A
T
553
A
A
565
G
A
566
G
A
574
G
G
577
A
T
578
G
A
583
T
T
584
C
G
588
C
C
589
A
A
594
C
T
595
A
A
597
G
T
599
A
Show more
S segment
A
423
G
C
429
T
T
430
C
G
432
C
A
435
G
A
441
G
C
456
T
C
471
T
A
474
G
G
477
A
T
480
C
C
481
T
G
483
A
A
487
C
T
513
C
C
519
T
G
522
A
G
543
A
Show more
Deletions
L segment
11996
Insertions
L segment
ins_67:CT, ins_11931:AT, ins_12108:TACCATTCATTTCAGTTTGATTATTTCTAGGGTGGGG
M segment
ins_5165:A
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
P
155
T
GPC:
T
160
A
GPC:
S
164
A
GPC:
K
165
N
GPC:
S
166
P
GPC:
G
167
A
GPC:
D
169
A
GPC:
N
170
S
GPC:
L
171
T
GPC:
A
172
E
GPC:
T
173
N
GPC:
N
174
S
GPC:
P
176
Q
GPC:
H
177
R
GPC:
T
180
V
GPC:
R
182
E
GPC:
P
183
T
GPC:
T
184
P
Show more
NP
NP:
N
150
H
NP:
Q
179
L
NP:
D
199
E
NP:
R
270
K
NP:
S
275
N
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
L
90
I
RdRp:
I
114
V
RdRp:
I
157
M
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
RdRp:
I
279
V
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L segment
M segment
S segment
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