This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001DNXQ.1

France/LOC_001DNXQ.1/2021-10-23
I. Schuffenecker, M. Jeannoel, Q. Semanas, A. Bal, L. Josset & B. Lina

Hopital Croix-Rousse, Centre National de Reference des Enterovirus et Parechovirus

Sample details

Collection date
2021-10-23
Earliest release date
2022-08-31
Sampling location
France (Lyon)
Isolate name
LYO-VRES21-808-15-FRA21

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-20 16:25insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2022-08-31
NCBI update date
2022-08-31
INSDC accession

Host

Host

Submission details

Submission ID
OM831181.1
Submitting group
Date submitted
2026-05-20 16:24:17 UTC
Date released
2026-05-20 16:34:14 UTC

Clade

Clade EV-D68
B3

Genotype

Genotype
EV-D68

Alignment and QC

Total SNPs
133
Length
927 (12.6%)

Nucleotide mutations

Mutations called relative to the AY426531.1 reference

Substitutions

  • T2389A
  • C2390T
  • A2392G
  • C2397T
  • T2421C
  • G2425A
  • G2427T
  • T2433C
  • C2439T
  • T2454C
  • G2463A
  • C2478T
  • G2490A
  • T2499C
  • C2500T
  • T2517A
  • T2526A
  • C2529A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the AY426531.1 reference

Substitutions

VP1

  • VP1:S1I
  • VP1:N2D
  • VP1:V13I
  • VP1:G76S
  • VP1:K84R
  • VP1:N90D
  • VP1:A92T
  • VP1:S95T
  • VP1:G97Q
  • VP1:H99D
  • VP1:K110R
  • VP1:N142S
  • VP1:D144N
  • VP1:S145N
  • VP1:M148V
  • VP1:K168E
  • VP1:E169K
  • VP1:N218T
Deletions
N/A
Insertions
N/A

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