This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001DE1R.1

Turkey/LOC_001DE1R.1/2008
A. Carhan, Y. Uyar, E. Dincer, A. Ozkul & E. Ozkaya

Refik Saydam Hygiene Center, Virology Department

Sample details

Collection date
2008
Earliest release date
2010-02-02
Sampling location
Turkey
Isolate name
KASTAMONU71-2008-1577

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2010-02-02
INSDC accession S

Host

Host

Submission details

Submission ID
FJ601850.1.S
Submitting group
Date submitted
2026-07-17 10:33:46 UTC
Date released
2026-07-17 10:35:49 UTC

Lineage

Segment S Lineage
V

Files

Annotations

Alignment and QC

Total SNPs S
77
Length S
522 (31.2%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • T157C
  • C166T
  • G171A
  • T175A
  • C178A
  • T182C
  • C187T
  • G189A
  • T199C
  • T211C
  • C217G
  • C244T
  • T250G
  • G256A
  • G262A
  • A268C
  • T274C
  • T283C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:S39N
  • NP:R45K
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
  • NP:H195R
  • NP:D199E
Deletions
N/A
Insertions
N/A

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