This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001AUUW.1

Spain/LOC_001AUUW.1/2016-01-01
P. Aguilera-Sepulveda, C. Cano-Gomez, R. Villalba, V. Borges, M. Aguero, D. Bravo-Barriga, E. Frontera, M. A. Jimenez-Clavero, J. Fernandez-Pinero & M. Elizalde

Instituto Nacional de Investigacion y Tecnologia Agraria y Alimentaria (INIA-CSIC), Centro de Investigacion en Sanidad Animal (CISA)

Sample details

Collection date
2016
Earliest release date
2025-02-05
Sampling location
Spain (Caceres, Extremadura)
Isolate name
2442-5_Spain/2016/CV-b_Caceres

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2025-02-05
NCBI update date
2025-02-05
INSDC accession

Host

Host

Submission details

Submission ID
OM302316.1
Submitting group
Date submitted
2026-10-05 17:01:18 UTC
Date released
2026-10-05 17:14:24 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
463
Total inserted nucs
1
Total deleted nucs
6
Length
10948 (99.3%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:A70S
  • NS1:K170R
  • NS2A:G211R
  • NS3:T436A
  • NS4B:V23I
  • NS4B:E249D
  • NS5:K41R
  • NS5:K177R
  • NS5:R422K
  • capsid:A52T
  • capsid:L117M
  • env:K93R
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • T195A
  • T234C
  • G250A
  • C282T
  • A288G
  • G354A
  • C381T
  • C445A
  • C483T
  • G492A
  • G495T
  • C561T
  • C600T
  • T606C
  • A630G
  • T639C
  • T642C
  • C711T
Deletions
10439-10444
Insertions
ins_10492:A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:A70S
  • NS1:K170R

NS2A

  • NS2A:G211R

NS2B

  • NS2B:V103A

NS3

  • NS3:P249T
  • NS3:T356I
  • NS3:T436A

NS4A

  • NS4A:A85V

NS4B

  • NS4B:V23I
  • NS4B:E249D

NS5

  • NS5:K41R
  • NS5:R422K

capsid

  • capsid:A52T
  • capsid:L117M

env

  • env:I126T
  • env:V159I
  • env:L167F
Deletions
N/A
Insertions
N/A

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