This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001AF4Q.1

United_Kingdom/LOC_001AF4Q.1/2017-09-27
M. Majumdar & J. Martin

National Institute for Biological Standards and Control, Virology

Sample details

Collection date
2017-09-27
Earliest release date
2019-07-08
Sampling location
United Kingdom (Dalmarnock, Glasgow)
Isolate name
EV-D68/SWG-DAL-27Sep17

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-09 06:42insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2019-07-08
NCBI update date
2019-07-08
INSDC accession

Host

Host

Submission details

Submission ID
MN018261.1
Submitting group
Date submitted
2026-05-09 06:42:20 UTC
Date released
2026-05-09 07:08:44 UTC

Clade

Clade EV-D68
A2/D

Genotype

Genotype
EV-D68

Alignment and QC

Total SNPs
119
Total deleted nucs
3
Length
875 (11.9%)

Nucleotide mutations

Mutations called relative to the AY426531.1 reference

Substitutions

  • T2433C
  • C2436T
  • A2442G
  • T2451C
  • T2454C
  • G2469A
  • C2478T
  • T2487C
  • C2500T
  • A2502G
  • T2517A
  • C2525G
  • C2529T
  • A2544G
  • A2565G
  • A2568G
  • G2589T
  • G2592A
Deletions

2806-2808
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the AY426531.1 reference

Substitutions

VP1

  • VP1:T46S
  • VP1:G76S
  • VP1:K84R
  • VP1:A92T
  • VP1:S95E
  • VP1:G97R
  • VP1:T98V
  • VP1:H99D
  • VP1:F103Y
  • VP1:N142S
  • VP1:D144N
  • VP1:K168E
  • VP1:E169K
  • VP1:I187V
  • VP1:V243I
  • VP1:M269L
  • VP1:R282K
  • VP1:D283E
Deletions

VP1

VP1:140
Insertions
N/A

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