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LOC_001AELS.1
Download
Download FASTA
Download metadata TSV
Kenya/LOC_001AELS.1/2015-02-21
M. V. T. Phan,
C. N. Agoti,
D. J. Nokes &
M. Cotten
Wellcome Trust Sanger Institute, Viral Genomics
Sample details
Collection date
2015-02-21
Earliest release date
2019-08-17
Sampling location
Kenya
Isolate name
20692_88_CV-A16
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-05-09 06:42
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2019-08-17
NCBI update date
2020-09-22
INSDC accession
MK989714.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
MK989714.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-09 06:42:20 UTC
Date released
2026-05-09 07:08:44 UTC
Clade
Clade CV-A16
B
Genotype
Genotype
CV-A16
Alignment and QC
Total SNPs
1371
Total inserted nucs
3
Total deleted nucs
5
Length
7411 (100%)
Nucleotide mutations
Mutations called relative to the
U05876.1
reference
Substitutions
C
47
T
T
54
A
C
61
T
T
62
C
C
71
T
G
89
A
T
95
C
C
100
A
A
102
T
T
103
A
C
118
T
A
119
T
T
120
A
T
121
G
G
122
A
C
123
A
C
128
A
T
129
C
Show more
Deletions
131, 583, 702-704
Insertions
ins_7413:AAA
Amino acid substitutions
Substitutions called relative to the
U05876.1
reference
Substitutions
2A
2A:
S
66
N
2A:
P
73
A
2A:
S
77
T
2A:
V
102
A
2B
2B:
N
30
T
2B:
H
31
Y
2B:
I
47
V
2B:
T
87
A
2C
2C:
R
268
K
2C:
E
272
D
2C:
Y
318
S
3B
3B:
T
10
V
3C
3C:
I
54
V
3C:
V
157
I
3D
3D:
N
37
D
3D:
R
46
K
3D:
I
74
V
3D:
K
75
R
3D:
N
91
D
3D:
E
105
D
3D:
S
139
G
3D:
T
197
A
3D:
I
205
V
3D:
T
216
V
3D:
V
256
I
3D:
T
308
A
3D:
R
346
K
3D:
G
370
E
VP1
VP1:
G
3
P
VP1:
A
11
T
VP1:
T
13
N
VP1:
R
15
Q
VP1:
G
17
N
VP1:
A
19
S
VP1:
S
22
A
VP1:
E
26
L
VP1:
N
31
D
VP1:
N
33
E
VP1:
E
36
S
VP1:
L
43
V
VP1:
Q
59
S
VP1:
E
61
K
VP1:
T
79
A
VP1:
D
104
E
VP1:
M
119
L
VP1:
A
139
V
Show more
VP2
VP2:
I
32
V
VP2:
K
43
P
VP2:
A
45
T
VP2:
I
126
V
VP2:
D
139
T
VP2:
V
149
A
VP2:
N
162
H
VP2:
V
170
I
VP2:
I
215
L
VP2:
A
226
T
VP2:
I
252
V
VP3
VP3:
A
33
P
VP3:
R
41
H
VP3:
Q
59
K
VP3:
S
60
T
VP3:
V
85
A
VP3:
N
93
D
VP3:
G
141
N
VP3:
L
147
I
VP3:
I
169
V
VP3:
K
182
R
VP3:
D
183
A
VP3:
T
193
I
VP3:
S
238
T
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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