This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001AEHY.1

China/LOC_001AEHY.1/2014-04-04
J. Li, X. Yao, M. Wang, Q. Wei, Z. Zhang & W. Shi

Shandong First Medical University & Shandong Academy of Medical Sciences, Key Laboratory of Etiology and Epidemiology of Emerging Infectious Diseases in Universities of Shandong

Sample details

Collection date
2014-04-04
Earliest release date
2021-06-14
Sampling location
China
Isolate name
QD106R

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-09 06:42insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2021-06-14
NCBI update date
2021-06-14
INSDC accession

Host

Host

Submission details

Submission ID
MK967669.1
Submitting group
Date submitted
2026-05-09 06:42:20 UTC
Date released
2026-05-09 07:08:44 UTC

Clade

Clade CV-A10
C

Genotype

Genotype
CV-A10

Alignment and QC

Total SNPs
1510
Total inserted nucs
23
Total deleted nucs
8
Length
7396 (99.6%)

Nucleotide mutations

Mutations called relative to the AY421767.1 reference

Substitutions

  • C29T
  • T56C
  • G58A
  • A60T
  • C62T
  • T64C
  • T67A
  • C69T
  • C90A
  • C100G
  • G101A
  • T102A
  • T103C
  • A106C
  • A109T
  • T110A
  • T111G
  • G113T
Deletions

93-95, 126, 127, 308-310
Insertions

ins_7409:AAAAAAAAAAAAAAAAAAAAAAA

Amino acid substitutions

Substitutions called relative to the AY421767.1 reference

Substitutions

2A

  • 2A:V29A
  • 2A:N57E
  • 2A:I82V
  • 2A:E102A
  • 2A:L123I
  • 2A:N129D
  • 2A:D136N

2B

  • 2B:I83V
  • 2B:S85A
  • 2B:S94P

2C

  • 2C:L56I
  • 2C:S61A
  • 2C:A75V
  • 2C:I76M
  • 2C:A103T
  • 2C:V108M
  • 2C:Y243F
  • 2C:K293R
  • 2C:M306V
  • 2C:I311V
  • 2C:N315S
  • 2C:V320I

3A

  • 3A:E13D
  • 3A:T17A
  • 3A:E39D
  • 3A:T47A
  • 3A:I65V

3B

  • 3B:A10T

3C

  • 3C:A18V
  • 3C:I30V
  • 3C:I49V
  • 3C:V54I
  • 3C:I86V
  • 3C:T93N
  • 3C:A95S
  • 3C:I116V
  • 3C:Q121R

3D

  • 3D:M6V
  • 3D:N32D
  • 3D:T66V
  • 3D:T75K
  • 3D:S93N
  • 3D:V134T
  • 3D:S139T
  • 3D:L143F
  • 3D:V197A
  • 3D:I205V
  • 3D:S236G
  • 3D:L251M
  • 3D:E255D
  • 3D:S264T
  • 3D:R346K
  • 3D:T392V
  • 3D:R396K
  • 3D:H399R

VP1

  • VP1:S13G
  • VP1:S14N
  • VP1:V16A
  • VP1:T21S
  • VP1:G23A
  • VP1:Q24T
  • VP1:D25N
  • VP1:N27E
  • VP1:T28S
  • VP1:G31N
  • VP1:A33T
  • VP1:M70V
  • VP1:A78T
  • VP1:S81N
  • VP1:V107T
  • VP1:E141K
  • VP1:F148Y
  • VP1:Q223L

VP2

  • VP2:L132I
  • VP2:N150T
  • VP2:A157T
  • VP2:S160T
  • VP2:N162H
  • VP2:S176A
  • VP2:I194V
  • VP2:V218I
  • VP2:V237I

VP3

  • VP3:L2I
  • VP3:T4A
  • VP3:E17D
  • VP3:S29T
  • VP3:S33T
  • VP3:R41H
  • VP3:D60E
  • VP3:N65T
  • VP3:A73S
  • VP3:I131V

VP4

  • VP4:S7T
  • VP4:R9K
  • VP4:S42T
Deletions
N/A
Insertions
N/A

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