This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001AEG1.1

China/LOC_001AEG1.1/2015-05-20
J. Li, X. Yao, M. Wang, Q. Wei, Z. Zhang & W. Shi

Shandong First Medical University & Shandong Academy of Medical Sciences, Key Laboratory of Etiology and Epidemiology of Emerging Infectious Diseases in Universities of Shandong

Sample details

Collection date
2015-05-20
Earliest release date
2021-06-14
Sampling location
China
Isolate name
D19-A10

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-09 06:42insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2021-06-14
NCBI update date
2021-06-14
INSDC accession

Host

Host

Submission details

Submission ID
MK967667.1
Submitting group
Date submitted
2026-05-09 06:42:20 UTC
Date released
2026-05-09 07:08:44 UTC

Clade

Clade CV-A10
C

Genotype

Genotype
CV-A10

Alignment and QC

Total SNPs
1494
Total inserted nucs
6
Total deleted nucs
4
Length
7338 (99%)

Nucleotide mutations

Mutations called relative to the AY421767.1 reference

Substitutions

  • C21T
  • T28C
  • T56C
  • G58A
  • A60T
  • C62T
  • T64C
  • T67A
  • C69T
  • C90A
  • T96C
  • T102A
  • A106C
  • C108A
  • A109C
  • A118T
  • C120T
  • C122T
Deletions

94, 308-310
Insertions

ins_102:AAC, ins_127:ACT

Amino acid substitutions

Substitutions called relative to the AY421767.1 reference

Substitutions

2A

  • 2A:V29A
  • 2A:N57E
  • 2A:I82V
  • 2A:E102T
  • 2A:L123I
  • 2A:D136N

2B

  • 2B:N30S
  • 2B:H31Y
  • 2B:S85A
  • 2B:S94P

2C

  • 2C:N9S
  • 2C:K35R
  • 2C:L56M
  • 2C:S61A
  • 2C:A75V
  • 2C:I76M
  • 2C:V108M
  • 2C:Y243F
  • 2C:K293R
  • 2C:M306V
  • 2C:I311V
  • 2C:N315S
  • 2C:V320I

3A

  • 3A:I8V
  • 3A:E13D
  • 3A:T17A
  • 3A:E39D

3C

  • 3C:I15V
  • 3C:A18V
  • 3C:I30V
  • 3C:D32G
  • 3C:R33H
  • 3C:I49V
  • 3C:T93N
  • 3C:A95S
  • 3C:V103I
  • 3C:I116V

3D

  • 3D:M6V
  • 3D:N32D
  • 3D:V33L
  • 3D:T66V
  • 3D:T75K
  • 3D:S93N
  • 3D:V134T
  • 3D:T138I
  • 3D:S139T
  • 3D:L143F
  • 3D:S164P
  • 3D:V197A
  • 3D:I205V
  • 3D:S236G
  • 3D:L251M
  • 3D:E255D
  • 3D:K312R
  • 3D:R346K

VP1

  • VP1:I7T
  • VP1:S13G
  • VP1:S14N
  • VP1:V16A
  • VP1:T21S
  • VP1:G23V
  • VP1:Q24T
  • VP1:D25N
  • VP1:N27E
  • VP1:T28S
  • VP1:G31N
  • VP1:A33T
  • VP1:M70V
  • VP1:A78T
  • VP1:S81N
  • VP1:V107T
  • VP1:F148Y
  • VP1:Q223L

VP2

  • VP2:L132I
  • VP2:N150T
  • VP2:A157T
  • VP2:S160T
  • VP2:N162H
  • VP2:S176A
  • VP2:I194V
  • VP2:V218I
  • VP2:V237I

VP3

  • VP3:L2I
  • VP3:T4A
  • VP3:E17D
  • VP3:S29T
  • VP3:S33T
  • VP3:R41H
  • VP3:D60E
  • VP3:N65T
  • VP3:A73S
  • VP3:I131V

VP4

  • VP4:S7T
  • VP4:R9K
  • VP4:S42T
Deletions
N/A
Insertions
N/A

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