This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001A8K0.1

Malaysia/UPM-Perak33/2017-01-01
M. Y. Ain-Najwa, A. R. Yasmin, A. R. Omar, S. S. Arshad, A. Jalila, H. O. Mohammed, K. Kumar & M. K. S. Ahmad Khusaini

Universiti Putra Malaysia, Veterinary Laboratory Diagnosis

Sample details

Collection date
2017
Earliest release date
2019-07-06
Sampling location
Malaysia
Isolate name
UPM-Perak33

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2019-07-06
NCBI update date
2019-07-06
INSDC accession

Host

Host

Submission details

Submission ID
MK327802.1
Submitting group
Date submitted
2026-10-08 17:01:19 UTC
Date released
2026-10-08 17:14:53 UTC

Lineage

Lineage
2

Files

Annotations

Alignment and QC

Total SNPs
70
Total deleted nucs
157
Total frame shifts
2
Frame shifts
capsid:5(nt:107-111),capsid:58-123(nt:267-465)
Length
366 (4.74%)
Amino Acid Mutations from founder clade
  • capsid:A52S
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • C109G
  • G261T
  • C269A
  • T272G
  • T273A
  • G274A
  • C277A
  • C278G
  • T297C
  • C298A
  • T309C
  • G312C
  • A333G
  • C336T
  • T339C
  • C340T
  • T348C
  • G354A
Deletions
100-106, 112-242, 250-258, 266, 281-289
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

capsid

  • capsid:A52S

prM

  • prM:M44L
  • prM:D46E
Deletions

capsid

capsid:2-4, capsid:6-49
Insertions
N/A

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