This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0017C5X.1

unknown/LOC_0017C5X.1/unknown
M. R. Henn, R. M. Newman, J. Brien, J. Levin, C. Malboeuf, M. Casali, C. Russ, N. Lennon, R. Erlich, S. Anderson, K. Rizzolo, L. Green, E. Ryan, Q. Yu, S. Young, A. Berlin, D. Heiman, S. Sykes, M. Koehrsen, D. Borenstein, R. Engels, E. Freedman, M. Gellesch, E. Heilman, ..., B. Birren

Broad Institute of MIT and Harvard

Sample details

Earliest release date
2011-03-12
Isolate name
WNV-1/Mus/BID-V4728/spleen

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2011-03-12
NCBI update date
2011-03-12
INSDC accession
BioProject accession

Host

Host
Is lab host
True

Submission details

Submission ID
HQ671668.1
Submitting group
Date submitted
2026-10-05 17:01:12 UTC
Date released
2026-10-05 17:10:50 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
23
Length
10623 (96.3%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:A224T
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS5:V49A
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159V
  • env:S452L
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • A630G
  • C1465T
  • C1974T
  • C2321T
  • G2562A
  • T3840C
  • C4107T
  • G4195A
  • A4257G
  • G5280A
  • C5865T
  • T6405C
  • C7015T
  • G7797A
  • T7826C
  • T8235C
  • C8859A
  • A8862G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:A224T

NS5

  • NS5:V49A

env

  • env:L167F
  • env:S452L
Deletions
N/A
Insertions
N/A

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