This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0017C5X.1

Display Name: China/LOC_0017C5X.1/2018
H. Zeng & H. Zheng

Sample details

Collection date
2018
Collection date (lower bound)
2018-01-01
Collection date (upper bound)
2018-12-31
Earliest release date
2020-09-30
Collection country
China
Isolate name
2018-CA10-R120

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-06 07:30insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Guangdong Provincial Centre for Disease Control and Prevention, Institute of Pathogenic Microbiology

INSDC

NCBI release date
2020-09-30
NCBI update date
2020-09-30
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
894
Total SNPs
212
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
12.07%
Total stop codons
0

Submission details

Submission ID
MN451362.1
Submitting group
Date submitted
2026-02-06 07:30:18 UTC
Date released
2026-02-06 07:42:47 UTC

Clade

Clade CV-A10
C

Genotype

Genotype
CV-A10

Nucleotide mutations

Mutations called relative to the AY421767.1 reference

Substitutions

  • C2445T
  • C2454T
  • C2457A
  • C2460T
  • C2463T
  • T2470C
  • A2473G
  • C2475A
  • G2477A
  • C2478T
  • T2481A
  • T2483C
  • G2487C
  • C2488A
  • G2490A
  • C2493T
  • A2496T
  • C2498G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the AY421767.1 reference

    Substitutions

    VP1

  • VP1:S13G
  • VP1:S14N
  • VP1:V16A
  • VP1:T21S
  • VP1:G23V
  • VP1:Q24A
  • VP1:D25N
  • VP1:N27E
  • VP1:T28S
  • VP1:G31N
  • VP1:A33T
  • VP1:M70V
  • VP1:A78T
  • VP1:S81N
  • VP1:V107T
  • VP1:F148Y
  • VP1:Q223L
  • VP1:V240E
    • Deletions
    None
    Insertions
    None

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