This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SDKX.1

Italy/LOC_000SDKX.1/2017-04-21
E. Mancuso, A. Polci, S. G. D'Alessio, L. Toma, M. Di Luca, M. Orsini, M. Di Domenico, M. Marcacci, G. Mancini, F. Spina, M. Goffredo & F. Monaco

Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise 'G. Caporale', Viral, Foreign Deseases of Animals

Sample details

Collection date
2017-04-21
Earliest release date
2018-08-20
Sampling location
Italy
Isolate name
HrTE24364

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2018-08-20
INSDC accession M

Host

Host

Submission details

Submission ID
MH595794.1.M
Submitting group
Date submitted
2026-11-02 10:53:46 UTC
Date released
2026-11-02 10:56:34 UTC

Files

Annotations

Alignment and QC

Total SNPs M
74
Total deleted nucs M
3087
Total unknown nucs M
364
Total frame shifts M
1
Frame shifts M
GPC:440-1685(nt:1408-5147)
Length M
1816 (84.6%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • C320T
  • T332C
  • G335T
  • A348C
  • T351C
  • C357T
  • T360C
  • A377G
  • T385C
  • A387C
  • C404T
  • T405C
  • T406C
  • C410T
  • G414A
  • A418C
  • C426T
  • C427T
Deletions

M

678-1407, 2070-4146, 4740-5018, 5172
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:S86R
  • GPC:S90P
  • GPC:V98A
  • GPC:T99P
  • GPC:L105P
  • GPC:G108S
  • GPC:D109A
  • GPC:P112F
  • GPC:P123L
  • GPC:V125G
  • GPC:L129I
Deletions

GPC

GPC:196-439
Insertions
N/A

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