This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SDDA.1

Display Name: Taiwan/LOC_000SDDA.1
C. H. Chen & M. T. Wan

Sample details

Collection date (upper bound)
2006-09-13
Earliest release date
2006-09-13
Collection country
Taiwan
Isolate name
HME-275

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-13 08:44insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Tatung University, Bioengineering

INSDC

NCBI release date
2006-09-13
INSDC accession CV-A16

Alignment and QC metrics CV-A16

Length CV-A16
301
Total SNPs CV-A16
22
Total inserted nucs CV-A16
1
Total deleted nucs CV-A16
2
Total ambiguous nucs CV-A16
0
Total unknown nucs CV-A16
0
Total frame shifts CV-A16
0
Completeness CV-A16
4.07%

Submission details

Submission ID
DQ888225.1.CV-A16
Submitting group
Date submitted
2025-10-13 08:43:45 UTC
Date released
2025-10-13 08:49:46 UTC

Clade

Clade CV-A16
B

Genotype

Genotype
CV-A16

Files

Annotations

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • G263A
  • T266C
  • A287G
  • C326T
  • T333C
  • G340A
  • A341T
  • G386A
  • C399T
  • A400G
  • T414C
  • G415A
  • C425T
  • A426G
  • C498T
  • G502A
  • C504T
  • C513T
    • Deletions
    518, 523
    Insertions
    ins_530:T

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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