This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SDCC.1

Display Name: Netherlands/LOC_000SDCC.1/2008-09-19
G. Jaramillo-Gutierrez, K. S. Benschop, E. C. Claas, A. S. de Jong, A. M. van Loon, S. D. Pas, O. Pontesilli, J. W. Rossen, C. M. Swanink, S. Thijsen, A. G. van der Zanden, H. G. van der Avoort, M. P. Koopmans, A. Meijer, K. S. M. Benschop, E. C. J. Claas, C. M. A. Swanink, A. G. M. van der Zanden, H. G. A. M. van der Avoort & M. P. G. Koopmans

Sample details

Collection date
2008-09-19
Collection date (lower bound)
2008-09-19
Collection date (upper bound)
2008-09-19
Earliest release date
2013-12-31
Collection country
Netherlands
Isolate name
4310800704

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-01-07 17:00insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
National Institute for Public Health and the Environment (RIVM), Center for Infectious Disease Control (CIb)

INSDC

NCBI release date
2013-12-31
NCBI update date
2015-04-21
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
219
Total SNPs
10
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
2.97%
Total stop codons
0

Submission details

Submission ID
JQ755312.1
Submitting group
Date submitted
2026-01-07 17:00:16 UTC
Date released
2026-01-07 17:04:18 UTC

Clade

Clade EV-D68
C

Genotype

Genotype
EV-D68

Nucleotide mutations

Mutations called relative to the AY426531.1 reference

Substitutions

  • T187C
  • G197A
  • C203T
  • T222C
  • A232T
  • T262C
  • G263A
  • C268T
  • G272T
  • G333A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the AY426531.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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