This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SDCC.1

Netherlands/LOC_000SDCC.1/2020-01-09
I. Aknouch, I. Garcia-Rodriguez, F. P. Giugliano, C. Calitz, G. Koen, H. van Eijk, N. Johannessson, S. Rebers, L. Brouwer, V. Muncan, K. J. Stittelaar, D. Pajkrt, K. C. Wolthers & A. Sridhar

Amsterdam UMC, Medical Microbiology OrganovirLabs

Sample details

Collection date
2020-01-09
Earliest release date
2023-04-30
Sampling location
Netherlands
Isolate name
C1-490

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-08 22:40insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-04-30
NCBI update date
2023-04-30
INSDC accession

Host

Host

Submission details

Submission ID
OP672358.1
Submitting group
Date submitted
2026-05-08 22:39:41 UTC
Date released
2026-05-08 23:08:00 UTC

Clade

Clade EV-A71
C1

Genotype

Genotype
EV-A71

Alignment and QC

Total SNPs
49
Length
310 (4.18%)

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • T2600A
  • G2603A
  • G2606A
  • T2636A
  • C2651T
  • A2654G
  • T2657C
  • A2669G
  • C2675T
  • T2678C
  • A2699G
  • C2702G
  • T2720C
  • T2723C
  • A2729C
  • A2730G
  • G2732A
  • C2738A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the U22521.1 reference

Substitutions

VP1

  • VP1:K98E
  • VP1:R145Q
  • VP1:F155Y
Deletions
N/A
Insertions
N/A

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