This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SD5S.1

Taiwan/LOC_000SD5S.1/2003
D. Cheng, Y.-W. Chiu, S.-W. Huang, Y.-Y. Lien, C.-L. Chang, H.-P. Tsai, Y.-F. Wang & J.-R. Wang

College of Medicine, National Cheng Kung University, Department of Medical Laboratory Science and Biotechnology

Sample details

Collection date
2003
Earliest release date
2022-11-02
Sampling location
Taiwan
Isolate name
N2755TW03

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-29 06:05insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2022-11-02
NCBI update date
2022-11-02
INSDC accession

Host

Host

Submission details

Submission ID
OP562216.1
Submitting group
Date submitted
2026-04-29 06:05:37 UTC
Date released
2026-04-29 06:24:31 UTC

Clade

Clade CV-A16
B1c

Genotype

Genotype
CV-A16

Alignment and QC

Total SNPs
208
Length
880 (11.9%)

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • T2448G
  • G2452C
  • G2453C
  • A2454C
  • G2475A
  • G2476A
  • C2481G
  • C2483A
  • T2485A
  • C2486A
  • C2487T
  • G2489A
  • T2493G
  • G2494A
  • G2495A
  • T2496C
  • T2499C
  • G2500T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the U05876.1 reference

Substitutions

VP1

  • VP1:G3P
  • VP1:A11T
  • VP1:T13N
  • VP1:S14N
  • VP1:R15Q
  • VP1:G17N
  • VP1:A19S
  • VP1:S22A
  • VP1:E26L
  • VP1:N33E
  • VP1:E36S
  • VP1:L43V
  • VP1:Q59S
  • VP1:E61N
  • VP1:T79A
  • VP1:M119L
  • VP1:A139V
  • VP1:I179V
Deletions
N/A
Insertions
N/A

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