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LOC_000SD5S.1
Download
Download FASTA
Download metadata TSV
Kosovo/LOC_000SD5S.1/2013
P. Emmerich,
X. Jakupi,
R. von Possel,
L. Berisha,
B. Halili,
S. Gunther,
D. Cadar,
S. Ahmeti &
J. Schmidt-Chanasit
Bernhard Nocht Institute for Tropical Medicine, Virology
Sample details
Collection date
2013
Earliest release date
2018-08-05
Sampling location
Kosovo
Isolate name
2013_12_157
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-04-14 11:41
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2018-08-05
INSDC accession L segment
MH133285.1
INSDC accession M segment
MH133284.1
INSDC accession S segment
MH133283.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
MH133285.1.L/MH133284.1.M/MH133283.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-04-14 11:41:47 UTC
Date released
2026-04-14 11:46:40 UTC
Clade & Lineage
Closest reference L segment
singleReference (variant)
Closest reference M segment
M (MH396653.1) (variant)
Closest reference S segment
S1 (OL774851.1)
Files
Annotations
LOC_000SD5S.1.embl
Alignment and QC
Total SNPs M segment
1068
Total inserted nucs M segment
5
Total deleted nucs M segment
3
Length M segment
5364 (98.3%)
Total SNPs L segment
1298
Total inserted nucs L segment
42
Length L segment
12150 (100%)
Total SNPs S segment
267
Total deleted nucs S segment
14
Length S segment
1678 (93.7%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L segment
G
23
T
A
35
G
A
42
T
G
43
C
T
49
C
A
53
G
T
58
A
C
59
T
C
63
T
C
64
G
T
66
C
A
72
G
A
73
T
A
91
G
G
93
A
C
100
T
A
109
G
A
124
G
Show more
M segment
T
36
C
G
46
A
A
47
G
A
57
T
T
63
C
T
64
C
T
67
A
G
72
C
A
76
G
T
78
C
T
79
C
G
80
A
C
85
T
C
88
T
T
96
C
T
98
C
C
99
T
G
103
A
Show more
S segment
T
16
A
C
31
G
T
33
C
G
34
T
A
51
G
T
63
C
A
65
G
A
93
G
A
98
T
C
99
T
A
105
G
G
118
A
C
126
T
T
141
C
G
155
A
T
159
A
T
166
C
C
171
T
Show more
Deletions
M segment
326-328
S segment
1654-1667
Insertions
L segment
ins_67:C, ins_11928:CG, ins_12092:CTATTCATACCGGTTTCATTATTTGAAGGGTGTGGGGGG
M segment
ins_0:TCTC, ins_5167:T
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
Y
7
C
GPC:
A
8
F
GPC:
V
9
I
GPC:
F
10
L
GPC:
C
11
Y
GPC:
C
15
L
GPC:
L
17
P
GPC:
K
19
G
GPC:
T
20
A
GPC:
N
21
H
GPC:
P
23
Q
GPC:
H
24
S
GPC:
G
26
A
GPC:
N
31
G
GPC:
H
33
N
Show more
NP
NP:
N
9
S
NP:
Y
20
F
NP:
V
27
M
NP:
S
39
N
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
Q
179
L
NP:
D
199
E
NP:
K
265
R
NP:
R
270
K
NP:
A
307
P
NP:
Y
311
F
NP:
N
419
S
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
D
55
A
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
I
176
M
RdRp:
A
202
V
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
218
R
RdRp:
D
264
G
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
352
I
Show more
Deletions
GPC
GPC:77
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L segment
M segment
S segment
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