This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SD5S.1

Display Name: France/LOC_000SD5S.1/2009
C. Hassel, A. Mirand, A. Lukashev, E. TerletskaiaLadwig, A. Farkas, I. Schuffenecker, S. Diedrich, H. P. Huemer, C. Archimbaud, H. Peigue-Lafeuille, C. Henquell, J. L. Bailly & J. Bailly

Sample details

Collection date
2009
Collection date (lower bound)
2009-01-01
Collection date (upper bound)
2009-12-31
Earliest release date
2014-03-20
Collection country
France
Collection subdivision level 1
Anger

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-13 14:40insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Universite d'Auvergne, UFR Medecine, Virologie, EPIE EA4843, 28, place Henri-Dunant, 63001 Clermont FerrandFrance

INSDC

NCBI release date
2014-03-20
NCBI update date
2016-03-02
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
2586
Total SNPs
471
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
34.91%
Total stop codons
0

Submission details

Submission ID
HG934248.1
Submitting group
Date submitted
2025-12-13 14:40:20 UTC
Date released
2025-12-13 14:43:45 UTC

Clade

Clade EV-A71
C2

Genotype

Genotype
EV-A71

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • C752A
  • C758A
  • A762G
  • G767A
  • A770C
  • C776T
  • G779T
  • T788C
  • G803C
  • A806G
  • A827T
  • C842T
  • A845G
  • G851C
  • T857C
  • T863A
  • T866A
  • A869T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions

    VP1

  • VP1:K18R
  • VP1:P22R
  • VP1:P30Q
  • VP1:D31N
  • VP1:K98E
  • VP1:R145E
  • VP1:L150M
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L
  • VP1:S240T
  • VP1:E244K
  • VP1:S246P
  • VP1:S275A
  • VP1:D282N
  • VP1:T289A

    • VP2

  • VP2:N45S
  • VP2:P94Q
  • VP2:N143D
  • VP2:M198I
  • VP2:T200A
  • VP2:F224Y

    • VP3

  • VP3:D93S
  • VP3:M100L
  • VP3:T232A
  • VP3:E237Q
  • VP3:A239G

    • VP4

  • VP4:T7A
    • Deletions
    None
    Insertions
    None

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