LOC_000SB4W.1

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India/LOC_000SB4W.1/2017

P. D. Yadav

National Institute of Virology, Maximum Containment Laboratory

Sample details

Collection date

2017

Earliest release date

2020-03-22

Sampling location

India (Vadodara District, Gujarat State)

Isolate name

NIV1727150

Data use terms

OPEN

Data use terms URL

https://#TODO-MVP/open

INSDC

NCBI release date

2020-03-22

INSDC accession L

MH396670.1

INSDC accession M

MH396671.1

INSDC accession S

MH396672.1

Host

human (Homo sapiens)

Submission details

Submission ID

MH396670.1.L/MH396671.1.M/MH396672.1.S

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-07-23 09:49:03 UTC

Date released

2026-07-23 09:51:49 UTC

Lineage

Segment S Lineage

IV.1

Files

Annotations

LOC_000SB4W.1.embl

Alignment and QC

Total SNPs M

1557

Total inserted nucs M

Total deleted nucs M

Length M

5346 (99.3%)

Total SNPs L

1637

Total inserted nucs L

Length L

12127 (99.9%)

Total SNPs S

227

Total inserted nucs S

106

Length S

1771 (99.6%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

G23T
G32A
A35G
G43T
T49C
C63G
C64T
T65C
T66C
T68C
G69A
G71C
C85T
G88A
G93A
A109G
C117A
A124G

M

G24C
G50C
A51G
A52T
G56T
T58A
T59A
T65A
C66T
T67C
A69G
A70T
T71G
T72A
G76A
A80G
C81T
C82T

S

A50G
G54A
G67A
C82T
G99A
G100A
A118G
C142T
C154A
T163C
C166T
G169A
T172C
C178A
T182C
G190A
T199C
C208T

Deletions

M

297-305, 628-630, 678-689, 5172-5186

Insertions

L

ins_58:T, ins_11917:CA, ins_12053:CTAC, ins_12086:CTACTATTCCAC, ins_12108:TTTATTATTTCTA

M

ins_236:CCGTCAACAGACACTGCC, ins_365:GTTGCCATTGTCCAAACACAAGAAACAGAAGCACCC, ins_5202:CA, ins_5248:C

S

ins_1672:GGTGTTCCCACGTGCGGCCTGAACCTGAGCGCATAATGTTATGAGGAGATGGGAGCACTAGTGATTCGCGGTATCAGGAATTTCAACCTAGAGAACCGAGCGGAAC

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references