LOC_000SB4W.1

Bulgaria/LOC_000SB4W.1/2012

B. L. Hua, F. E. Scholte, V. Ohlendorf, A. Kopp, M. Marklewitz, C. Drosten, S. T. Nichol, C. Spiropoulou, S. Junglen & E. Bergeron

Institute of Virology, Charite Universitatsmedizin Berlin

Sample details

Collection date

2012

Earliest release date

2020-11-04

Sampling location

Bulgaria

Isolate name

Malko Tarnovo-BG2012-T1362

Data use terms

Changed	User	Data use terms
2026-06-02 13:18	insdc_ingest_user	OPEN

OPEN

Data use terms URL

https://#TODO-MVP/open

INSDC

NCBI release date

2020-11-04

INSDC accession L

MK299346.1

INSDC accession M

MK299345.1

INSDC accession S

MK299344.1

Host

hard ticks; hardbacked ticks; scale ticks (Rhipicephalus bursa)

Submission details

Submission ID

MK299346.1.L/MK299345.1.M/MK299344.1.S

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-06-02 13:18:49 UTC

Date released

2026-06-02 13:21:57 UTC

Lineage

Segment S Lineage

Files

Annotations

LOC_000SB4W.1.embl

Alignment and QC

Total SNPs M

1548

Total inserted nucs M

109

Total deleted nucs M

Length M

5364 (98.7%)

Total SNPs L

2684

Total inserted nucs L

Total deleted nucs L

Total ambiguous nucs L

Length L

12129 (100%)

Total SNPs S

333

Total inserted nucs S

Length S

1680 (99.8%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

C2G
T3G
A6T
T12G
T58C
T62G
C63A
T65C
G71C
C76A
C82G
A91G
T106C
A113C
T115G
T131A
C133A
C136T

M

A51G
A52T
G56T
A57G
T59G
G60A
G62A
T67C
A69G
A70C
T71A
G76A
C77T
A80G
C81T
T83G
C85A
A87C

S

T23C
C38A
T49A
G54A
A61G
G67A
T79C
A81G
T88C
G91T
A92C
G99A
A118G
A130G
C154T
T157C
C166T
G169A

Deletions

L

15-55, 11935

M

393-431, 5179-5182

Insertions

L

ins_0:G, ins_11969:ACCCAGCAT, ins_12017:GTCATGGTCAATTC, ins_12051:AGCTTACTCTGCCTCATAT, ins_12096:GCAAGGGTGTGGGGGGAACG

M

ins_191:GGCACTGCCTTCAATTCAGTGCACAATGTTACCACTAATAGTCAGAAGCAGCCC, ins_566:TCC, ins_5285:CAGCATCATCCCCCCCTGGCAAACCTATGTCTACAAGAATCAACAAAGCAGA

S

ins_1582:AAACG, ins_1624:ATTCTT

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references