This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SB4W.1

LOC_000SB4W.1
H. Norder, L. Bjerregaard, L. Magnius, B. Lina, M. Aymard, J. J. Chomel & L. O. Magnius

Swedish Institute for Infectious Disease Control, Virological Department

Sample details

Earliest release date
2003-04-19
Isolate name
C6292-115/99

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-23 16:01insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2003-04-19
NCBI update date
2016-07-25
INSDC accession

Submission details

Submission ID
AY208086.1
Submitting group
Date submitted
2026-03-23 16:00:51 UTC
Date released
2026-03-23 16:02:58 UTC

Clade

Clade CV-A16
B1c

Genotype

Genotype
CV-A16

Alignment and QC

Total SNPs
77
Length
313 (4.22%)
Variant
False

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • T2610G
  • T2613A
  • A2619T
  • C2620A
  • A2621G
  • G2622T
  • T2625C
  • G2626A
  • T2634C
  • A2637T
  • A2640G
  • C2643T
  • C2644A
  • G2646A
  • T2653C
  • T2661C
  • T2670G
  • A2673G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the U05876.1 reference

Substitutions

VP1

  • VP1:Q59S
  • VP1:E61K
  • VP1:T79A
  • VP1:M119L
  • VP1:A139V
  • VP1:Y155F
Deletions
N/A
Insertions
N/A

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