This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SB4W.1

Italy/LOC_000SB4W.1/2017-04-21
E. Mancuso, A. Polci, S. D'Alessio, L. Toma, M. Di Luca, M. Orsini, M. Di Domenico, M. Marcacci, G. Mancini, F. Spina, M. Goffredo & F. Monaco

Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise 'G. Caporale', Viral, Foreign Deseases of Animals

Sample details

Collection date
2017-04-21
Earliest release date
2018-08-20
Sampling location
Italy
Isolate name
HrTE24364

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2018-08-20
INSDC accession S

Host

Host

Submission details

Submission ID
MH576575.1.S
Submitting group
Date submitted
2026-07-27 14:05:17 UTC
Date released
2026-07-27 14:08:59 UTC

Lineage

Segment S Lineage
III

Files

Annotations

Alignment and QC

Total SNPs S
20
Total inserted nucs S
1
Total deleted nucs S
844
Total unknown nucs S
100
Total frame shifts S
1
Frame shifts S
NP:397-483(nt:1242-1504)
Length S
744 (88.9%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • A138T
  • G229A
  • T253C
  • T393G
  • A395T
  • G397T
  • G1247T
  • A1279G
  • C1282T
  • T1306G
  • C1309T
  • C1348T
  • A1354G
  • A1426G
  • C1447T
  • C1468T
  • C1523T
  • G1586T
  • C1659A
  • G1661A
Deletions

S

398-1241
Insertions

S

ins_1581:T

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:D28V
  • NP:K114Y
Deletions

NP

NP:115-396
Insertions
N/A

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