This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SASL.1

USA/LOC_000SASL.1/2018-06
D. W. Hawman, E. Haddock, K. Meade-White, B. Williamson, P. W. Hanley, K. Rosenke, T. Komeno, Y. Furuta, B. B. Gowen, H. Feldmann & F. Feldmann

Rocky Mountain Labs NIH/NIAD, Laboratory of Virology

Sample details

Collection date
2018-06
Earliest release date
2018-07-03
Sampling location
USA
Isolate name
10200

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2018-07-03
INSDC accession L
INSDC accession M
INSDC accession S

Host

Host

Submission details

Submission ID
MH483989.1.L/MH483988.1.M/MH483987.1.S
Submitting group
Date submitted
2026-07-10 15:20:27 UTC
Date released
2026-07-10 15:24:02 UTC

Lineage

Segment S Lineage
III

Files

Annotations

Alignment and QC

Total SNPs L
14
Total ambiguous nucs L
2
Length L
12083 (99.8%)
Total SNPs M
1
Total ambiguous nucs M
4
Length M
5338 (99.4%)
Total SNPs S
1
Length S
1636 (97.8%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • C1495T
  • A1879G
  • G3216A
  • C4117A
  • C5054A
  • T5065A
  • C5100A
  • C5798T
  • A5830T
  • T5875C
  • G8896A
  • G9764A
  • G11374A
  • C11761T

M

  • G3565A

S

  • T36G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:G1158E

RdRp

  • RdRp:G1047E
  • RdRp:P1660T
  • RdRp:T1675N
  • RdRp:V3230I
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue