This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000S6WG.1

South_Africa/LOC_000S6WG.1/1984
M. Zivcec, L. Guerrero, C. Albarino, C. Spiropoulou, P. E. Rollin, T. G. Ksiazek, R. Swanepoel & S. T. Nichol

Centers for Disease Control and Prevention, Viral Special Pathogens Branch

Sample details

Collection date
1984
Earliest release date
2017-09-06
Sampling location
South Africa
Isolate name
SPU264_84_2_813058_S

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-04 16:51insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2017-09-06
INSDC accession S

Host

Host

Submission details

Submission ID
MF511222.1.S
Submitting group
Date submitted
2026-06-04 16:51:11 UTC
Date released
2026-06-04 16:54:25 UTC

Lineage

Segment S Lineage
III

Files

Annotations

Alignment and QC

Total SNPs S
115
Total inserted nucs S
1
Total deleted nucs S
6
Length S
1655 (99.3%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • G54A
  • G67A
  • G99A
  • A121G
  • C166T
  • C178A
  • G189A
  • T199C
  • G202A
  • C217T
  • G229A
  • C235T
  • C238T
  • A247G
  • G271A
  • C295T
  • A298G
  • A322G
Deletions

S

1629-1634
Insertions

S

ins_1577:A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:R15K
  • NP:R45K
  • NP:K91R
  • NP:T124A
  • NP:G125N
  • NP:E161D
  • NP:L179Q
  • NP:H195R
  • NP:I246V
  • NP:S301G
  • NP:K428R
  • NP:V436I
Deletions
N/A
Insertions
N/A

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