This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000S6WG.1

Display Name: China/LOC_000S6WG.1/2010-06
K. Zhao, X. Han, G. Wang, W. Hu, W. Zhang, X. F. Yu & X.-F. Yu

Sample details

Collection date
2010-06
Collection date (lower bound)
2010-06-01
Collection date (upper bound)
2010-06-30
Earliest release date
2011-07-24
Collection country
China
Isolate name
changchun115

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-22 14:40insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Johns Hopkins Bloomberg School of Public Health, Molecular Microbiology and Immunology

INSDC

NCBI release date
2011-07-24
INSDC accession CV-A16

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics CV-A16

Length CV-A16
1022
Total SNPs CV-A16
207
Total inserted nucs CV-A16
0
Total deleted nucs CV-A16
0
Total ambiguous nucs CV-A16
0
Total unknown nucs CV-A16
0
Total frame shifts CV-A16
0
Completeness CV-A16
13.79%

Submission details

Submission ID
HQ450565.1.CV-A16
Submitting group
Date submitted
2025-10-22 14:40:03 UTC
Date released
2025-10-22 14:50:47 UTC

Clade

Clade CV-A16
B1b

Genotype

Genotype
CV-A16

Files

Annotations

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • T3120C
  • A3123G
  • C3126T
  • C3129T
  • C3141T
  • C3150T
  • A3153G
  • T3156A
  • C3162G
  • C3174A
  • C3177A
  • T3180C
  • T3183C
  • C3186T
  • T3192G
  • C3193A
  • G3198A
  • T3201C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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