This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000S6GB.1

Zambia/LOC_000S6GB.1/2015
M. Kajihara, M. Simuunza, N. Saasa, G. Dautu, A. Mori-Kajihara, Y. Qiu, R. Nakao, Y. Eto, H. Furumoto, B. M. Hang'ombe, Y. Orba, H. Sawa, E. Simulundu, S. Fukushi, S. Morikawa, M. Saijo, J. Arikawa, S. Kabilika, M. Monze, V. Mukonka, A. Mweene, A. Takada & K. Yoshimatsu

Research Center for Zoonosis Control; Kita 20 Nishi 10, Kita-ku, Sapporo, Hokkaido 001-0020

Sample details

Collection date
2015
Earliest release date
2021-05-14
Sampling location
Zambia
Isolate name
ZT15-90

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2021-05-14
INSDC accession M

Host

Host

Submission details

Submission ID
LC534909.1.M
Submitting group
Date submitted
2026-07-13 16:59:07 UTC
Date released
2026-07-13 17:02:26 UTC

Files

Annotations

Alignment and QC

Total SNPs M
176
Length M
535 (9.97%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • G50T
  • G55A
  • A57C
  • T59A
  • A69G
  • A70G
  • T71A
  • G73T
  • C74T
  • A75G
  • A80G
  • T83C
  • C85T
  • T86C
  • C96T
  • T98C
  • T100C
  • T102C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:H2Y
  • GPC:I3T
  • GPC:S4P
  • GPC:M6V
  • GPC:Y7C
  • GPC:I9V
  • GPC:C15W
  • GPC:G16N
  • GPC:E19G
  • GPC:H21S
  • GPC:G22T
  • GPC:H24V
  • GPC:E26G
  • GPC:R28Q
  • GPC:K31R
  • GPC:D33H
  • GPC:M35V
  • GPC:T36V
Deletions
N/A
Insertions
N/A

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