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LOC_000S6GB.1
Download
Download FASTA
Download metadata TSV
South_Africa/LOC_000S6GB.1/1985
M. Zivcec,
L. Guerrero,
C. Albarino,
C. Spiropoulou,
P. E. Rollin,
T. G. Ksiazek,
R. Swanepoel &
S. T. Nichol
Centers for Disease Control and Prevention, Viral Special Pathogens Branch
Sample details
Collection date
1985
Earliest release date
2017-09-06
Sampling location
South Africa
Isolate name
SPU94_85_813055_M
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-05-20 16:23
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2017-09-06
INSDC accession M
MF511238.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
MF511238.1.M
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-20 16:23:01 UTC
Date released
2026-05-20 16:26:31 UTC
Files
Annotations
LOC_000S6GB.1.embl
Alignment and QC
Total SNPs M
1013
Total inserted nucs M
5
Total deleted nucs M
14
Total ambiguous nucs M
2
Total unknown nucs M
3
Total frame shifts M
1
Frame shifts M
GPC:184-209(nt:640-717)
Length M
5344 (99.7%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
M
G
50
T
A
51
G
A
57
C
C
66
T
A
70
G
T
71
A
G
73
T
A
80
G
T
83
C
G
84
A
C
85
T
T
86
C
C
92
T
C
96
T
T
98
C
T
100
C
T
102
C
T
105
C
Show more
Deletions
M
639, 5280-5292
Insertions
M
ins_717:G, ins_5170:G, ins_5250:TCN
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
H
2
Y
GPC:
I
3
T
GPC:
S
4
P
GPC:
M
6
V
GPC:
Y
7
C
GPC:
I
9
V
GPC:
L
10
F
GPC:
C
15
W
GPC:
G
16
N
GPC:
E
19
G
GPC:
H
21
L
GPC:
G
22
V
GPC:
S
23
P
GPC:
H
24
T
GPC:
E
26
G
GPC:
R
28
Q
GPC:
D
33
G
GPC:
G
39
E
Show more
Deletions
GPC
GPC:183
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
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