This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000S6GB.1

United_Arab_Emirates/LOC_000S6GB.1/1995-09-16
M. Zivcec, L. I. W. Guerrero, C. G. Albarino, E. Bergeron, S. T. Nichol, C. F. Spiropoulou, L. Guerrero, C. Albarino, C. Spiropoulou & S. Nichol

Centers for Disease Control and Prevention, Viral Special Pathogens Branch

Sample details

Collection date
1995-09-16
Earliest release date
2017-09-05
Sampling location
United Arab Emirates
Isolate name
813040 UAE

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-23 14:57insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2017-09-05
INSDC accession L segment
INSDC accession M segment
INSDC accession S segment

Host

Host

Submission details

Submission ID
MF289414.1.L/MF289415.1.M/MF289416.1.S
Submitting group
Date submitted
2026-06-23 14:57:32 UTC
Date released
2026-06-23 15:00:32 UTC

Clade & Lineage

Closest reference L segment
singleReference (variant)
Closest reference M segment
M (MH396653.1)
Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs M segment
43
Total inserted nucs M segment
8
Total deleted nucs M segment
3
Total ambiguous nucs M segment
8
Length M segment
5375 (98.3%)
Total SNPs S segment
229
Total inserted nucs S segment
19
Length S segment
1676 (91.7%)
Total SNPs L segment
1644
Total inserted nucs L segment
202
Total ambiguous nucs L segment
6
Length L segment
12310 (100%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

L segment

  • T10C
  • G23T
  • A35G
  • G43T
  • C48T
  • T49C
  • C63G
  • C64T
  • T65C
  • T66C
  • T68C
  • G69A
  • G71C
  • C85T
  • G88A
  • G93A
  • A109G
  • C117A

M segment

  • G65A
  • C366T
  • C451T
  • G634A
  • C720T
  • T804C
  • C817T
  • C895T
  • C970T
  • T1000C
  • A1066G
  • A1130G
  • C1162T
  • G1354A
  • C1381T
  • A1382G
  • T1453C
  • C1525T

S segment

  • C15T
  • T16A
  • C31G
  • T32C
  • C66T
  • A84G
  • T90C
  • A93G
  • A98T
  • A102G
  • C150T
  • G153A
  • T156C
  • T159C
  • T166C
  • A173G
  • G174A
  • G180A
Deletions

M segment

5352-5354
Insertions

L segment

ins_0:CTCTTTCCCTR, ins_58:T, ins_11917:CA, ins_12053:CTACAATTTTCTCAGCTATTAATTAACCTTTACTTTTCT, ins_12077:ATGTCC, ins_12108:GACTAATCGAACCATCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGCGCTCTCGCAGACCCNGACGCACCCCCGCCACGCAGTTTTATCCGGTAAAGCGAATGATTAGAGGTCTTGGGGCCGAAACGATCTC

M segment

ins_0:TCAACATC

S segment

ins_0:YRKCGMMVAWVRAMCACGT

Amino acid substitutions

Substitutions called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

GPC

  • GPC:T93I
  • GPC:S211L
  • GPC:I239T
  • GPC:T348A
  • GPC:I432V
  • GPC:R688K
  • GPC:S1449G
  • GPC:K1533E

NP

  • NP:Y20F
  • NP:K45R
  • NP:V83A
  • NP:D116E
  • NP:A124S
  • NP:Q179L
  • NP:D199E
  • NP:R270K
  • NP:A307V
  • NP:E322D
  • NP:Q405L
  • NP:R428K

RdRp

  • RdRp:S6N
  • RdRp:A14D
  • RdRp:S19T
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:G113D
  • RdRp:I114V
  • RdRp:T163A
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:I223V
  • RdRp:K275R
Deletions
N/A
Insertions
N/A

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