This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000S6GB.1

Spain/LOC_000S6GB.1
R. R. Sanchez-Arroyo, F. F. de Ory, M. A. M. A. Budino, M. A. M. A. Garcinuno, C. C. de la Hoz, A. A. Gutierrez, F. F. Diez, A. A. Negredo, A. A. Vazquez, L. L. Hernandez & M. P. M. P. Sanchez-Seco

National Center of Microbiology, Institute of Health Carlos III, Arbovirus and Imported Viral diseases

Sample details

Earliest release date
2021-01-13
Sampling location
Spain
Isolate name
Badajoz 2018

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-27 15:36insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2021-01-13
INSDC accession L
INSDC accession M
INSDC accession S

Submission details

Submission ID
MN689741.1.L/MN689740.1.M/MN689739.1.S
Submitting group
Date submitted
2026-02-27 15:36:32 UTC
Date released
2026-02-27 15:41:50 UTC

Host

Host

Lineage

Segment S Lineage
IV.1

Files

Annotations

Alignment and QC

Total SNPs L
695
Total inserted nucs L
2
Length L
12080 (99.8%)
Variant L
True
Total SNPs M
436
Total inserted nucs M
1
Length M
5324 (99.2%)
Variant M
True
Total SNPs S
216
Total inserted nucs S
1
Length S
1638 (97.9%)
Variant S
True

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • T49C
  • C63G
  • C64T
  • T65C
  • T67C
  • T70C
  • G93A
  • T160C
  • T163C
  • C208T
  • G217A
  • T229C
  • T254A
  • A297T
  • G301T
  • C313T
  • C331T
  • C332T

M

  • G50C
  • T68C
  • A70G
  • C81T
  • C85T
  • T86C
  • A117G
  • C119A
  • A128G
  • A146G
  • G149A
  • T159C
  • A161G
  • A169G
  • A174G
  • G175A
  • C177T
  • A192G

S

  • C31T
  • A50G
  • G54A
  • G67A
  • C82T
  • A118G
  • A124G
  • A130G
  • C139T
  • C142T
  • C154T
  • C166T
  • G169A
  • C178G
  • T182C
  • G189A
  • G190A
  • T199C
Deletions
N/A
Insertions

L

ins_11928:TG

M

ins_5168:G

S

ins_1579:C

Amino acid mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:I9V
  • GPC:S23P
  • GPC:E26G
  • GPC:R28E
  • GPC:H29Y
  • GPC:T34G
  • GPC:N41S
  • GPC:P42Q
  • GPC:P58S
  • GPC:S68I
  • GPC:P80S
  • GPC:G85E
  • GPC:S86G
  • GPC:P88S
  • GPC:S90P
  • GPC:T92A
  • GPC:P94S
  • GPC:L96P

NP

  • NP:R45K
  • NP:D116E
  • NP:T124S
  • NP:G125S
  • NP:N182S
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:A271S
  • NP:S301G
  • NP:Q405L
  • NP:V436I

RdRp

  • RdRp:S6N
  • RdRp:Y60N
  • RdRp:Q74L
  • RdRp:E75D
  • RdRp:S205L
  • RdRp:N206H
  • RdRp:T481A
  • RdRp:I505T
  • RdRp:R764K
  • RdRp:T767A
  • RdRp:P774L
  • RdRp:N779S
  • RdRp:S782G
  • RdRp:I783T
  • RdRp:K809R
  • RdRp:G812E
  • RdRp:T818I
  • RdRp:I855V
Deletions
N/A
Insertions
N/A

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