This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000S6GB.1

Greece/LOC_000S6GB.1/2015-06
A. Papa, E. Papadopoulou, S. Pappa & E. PAPADOPOULOU

MICROBIOLOGY, AUTH, AUTH CAMPUS, 54124

Sample details

Collection date
2015-06
Earliest release date
2018-01-23
Sampling location
Greece (North, Kastoria)
Isolate name
Pentalofos 3

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2018-01-23
INSDC accession S

Host

Host
Is lab host
True

Submission details

Submission ID
LT673890.1.S
Submitting group
Date submitted
2026-07-10 15:20:27 UTC
Date released
2026-07-10 15:24:02 UTC

Lineage

Segment S Lineage
VI

Files

Annotations

Alignment and QC

Total SNPs S
343
Total inserted nucs S
4
Length S
1675 (99.9%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • T23C
  • C38A
  • T49A
  • G54A
  • A61G
  • C64T
  • G67A
  • T79C
  • A81G
  • G91T
  • A92C
  • G99A
  • A109G
  • A118G
  • A130G
  • C154T
  • T157C
  • T163C
Deletions
N/A
Insertions

S

ins_1584:ATGC

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:N9S
  • NP:E12D
  • NP:M13L
  • NP:R15K
  • NP:S39N
  • NP:F48Y
  • NP:A100T
  • NP:G101S
  • NP:V117I
  • NP:T124S
  • NP:V141I
  • NP:A146T
  • NP:V163L
  • NP:M164V
  • NP:S165P
  • NP:L179I
  • NP:G185S
  • NP:V198I
Deletions
N/A
Insertions
N/A

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