This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
CCHF (Multi-Ref)
SeqSets
Login
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
CCHF (Multi-Ref)
Test Dummy Organism
Test organism (with files)
Ebola Sudan
Enterovirus
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
CCHF (Multi-Ref)
|
Browse data
Submit sequences
Select organism section
Browse data
Submit sequences
LOC_000S6GB.1
Download
Download FASTA
Download metadata TSV
Display Name: Russia/LOC_000S6GB.1/2016-06-23
A. Volynkina,
E. Kotenev &
A. Kolosov
Sample details
Collection date
2016-06-23
Collection date (lower bound)
2016-06-23
Collection date (upper bound)
2016-06-23
Earliest release date
2020-07-27
Collection country
Russia
Isolate name
143-STV/HU-2016
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-02-04 00:14
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Stavropol State Research Anti-Plague Institute, Laboratory on Natural Focal Infections
INSDC
NCBI release date
2020-07-27
INSDC accession L
MN624813.1
INSDC accession M
MN624582.1
INSDC accession S
MN624351.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics L
Length L
437
Total SNPs L
44
Total inserted nucs L
0
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
3.61%
Total stop codons L
0
Alignment and QC metrics M
Length M
435
Total SNPs M
74
Total inserted nucs M
0
Total deleted nucs M
0
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
7.97%
Total stop codons M
0
Alignment and QC metrics S
Length S
538
Total SNPs S
84
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
29.79%
Total stop codons S
0
Submission details
Submission ID
MN624813.1.L/MN624582.1.M/MN624351.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-04 00:13:53 UTC
Date released
2026-02-04 00:16:39 UTC
Files
Annotations
LOC_000S6GB.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L
L:
T
131
A
L:
C
148
T
L:
T
151
C
L:
T
154
C
L:
T
160
C
L:
T
163
C
L:
T
202
C
L:
T
218
C
L:
T
229
C
L:
A
240
C
L:
T
241
C
L:
T
253
C
L:
T
254
A
L:
G
264
A
L:
C
265
T
L:
A
268
G
L:
C
276
T
L:
C
284
A
Show more
M
M:
C
4640
T
M:
T
4645
C
M:
C
4648
T
M:
A
4660
G
M:
A
4663
G
M:
T
4672
C
M:
A
4685
G
M:
A
4690
T
M:
C
4697
A
M:
A
4709
G
M:
G
4714
A
M:
C
4720
T
M:
A
4723
G
M:
A
4726
G
M:
T
4738
A
M:
T
4739
C
M:
G
4741
A
M:
C
4744
T
Show more
S
S:
C
99
T
S:
A
105
G
S:
T
117
C
S:
G
118
A
S:
C
126
T
S:
T
141
C
S:
C
150
T
S:
G
155
A
S:
T
159
A
S:
T
166
C
S:
C
171
T
S:
A
186
G
S:
T
195
C
S:
C
201
T
S:
A
213
G
S:
T
219
C
S:
C
228
T
S:
G
231
A
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
K
1533
E
GPC:
E
1534
D
GPC:
Q
1537
K
GPC:
N
1541
D
GPC:
N
1564
D
GPC:
G
1590
S
GPC:
I
1591
V
GPC:
V
1595
F
GPC:
I
1597
V
GPC:
F
1600
L
GPC:
T
1601
L
GPC:
T
1604
A
GPC:
I
1607
V
GPC:
I
1610
V
GPC:
R
1618
K
GPC:
I
1619
V
GPC:
N
1655
S
NP
NP:
V
27
M
NP:
S
39
N
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
Q
179
L
NP:
D
199
E
RdRp
RdRp:
S
19
T
RdRp:
D
55
A
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
Deletions
None
Insertions
None
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
Report an issue with this sequence or metadata
Create GitHub issue