This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000S6GB.1

France/LOC_000S6GB.1/2021-11-30
M. M. Coste-Burel

National Institute for Public Health and the Environment, Centre for Infectious Disease Research, Diagnostics and Screening

Sample details

Collection date
2021-11-30
Earliest release date
2023-12-31
Sampling location
France
Isolate name
FR03-21-15

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-17 13:07insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-12-31
NCBI update date
2023-12-31
INSDC accession

Host

Host

Submission details

Submission ID
OQ139597.1
Submitting group
Date submitted
2026-03-17 13:06:56 UTC
Date released
2026-03-17 13:22:29 UTC

Clade

Clade EV-D68
B3

Genotype

Genotype
EV-D68

Alignment and QC

Total SNPs
60
Total deleted nucs
3
Length
343 (4.7%)
Variant
False

Nucleotide mutations

Mutations called relative to the AY426531.1 reference

Substitutions

  • T2526A
  • C2529T
  • C2532T
  • A2541G
  • C2550T
  • A2568G
  • G2577A
  • G2589C
  • G2592A
  • G2595T
  • T2596C
  • T2613C
  • G2614A
  • G2619A
  • C2625T
  • C2626T
  • A2628G
  • G2631A
Deletions

2818-2820
Insertions
N/A

Amino acid mutations

Mutations called relative to the AY426531.1 reference

Substitutions

VP1

  • VP1:G76S
  • VP1:K84R
  • VP1:N90D
  • VP1:A92T
  • VP1:S95A
  • VP1:G97Q
  • VP1:T98A
  • VP1:H99D
  • VP1:K110R
  • VP1:N142S
  • VP1:S145N
  • VP1:M148V
Deletions

VP1

VP1:144
Insertions
N/A

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