LOC_000S6GB.1

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China/LOC_000S6GB.1/2019

W. Shi, H. Zhou & Y. Wang

Shandong First Medical University & Shandong Academy of Medical Sciences, Key Laboratory of Etiology and Epidemiology of Emerging Infectious Diseases in Universities of Shandong

Sample details

Collection date

2019

Earliest release date

2025-10-20

Sampling location

China

Isolate name

CCHFV/KELML01/2019/China/Xinjiang

Data use terms

OPEN

Data use terms URL

https://#TODO-MVP/open

INSDC

NCBI release date

2025-10-20

INSDC accession L

PV023430.1

INSDC accession M

PV023431.1

INSDC accession S

PV023432.1

Host

ticks (Ixodoidea)

Submission details

Submission ID

PV023430.1.L/PV023431.1.M/PV023432.1.S

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-09-22 19:02:31 UTC

Date released

2026-09-22 19:07:58 UTC

Lineage

Segment S Lineage

IV.2

Files

Annotations

LOC_000S6GB.1.embl

Alignment and QC

Total SNPs L

1537

Total inserted nucs L

Total deleted nucs L

Total ambiguous nucs L

Length L

12133 (99.9%)

Total SNPs S

208

Total inserted nucs S

Total ambiguous nucs S

Length S

1649 (98.5%)

Total SNPs M

1536

Total inserted nucs M

153

Total deleted nucs M

Total frame shifts M

Frame shifts M

GPC:20-38(nt:150-206),GPC:86-115(nt:347-437)

Length M

5461 (99.5%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

G23T
G32A
A35G
A42G
G43C
T49C
C59T
G71C
G93A
A109G
G112A
A113C
G130A
T131A
T139C
C148T
T151C
T160C

M

G50T
A51G
A52T
G56T
A57G
T58G
T59G
G62A
T68C
A70C
C74A
A80G
C81T
C82T
T83G
G84T
C85T
T86C

S

C38A
T48C
G51A
G54A
A61G
G67A
G99A
A118G
T157C
C166T
C178A
T182C
G190A
G196A
C217T
G229A
C235T
T250A

Deletions

L

67, 68, 12066, 12067

M

207-216, 343-346, 671-685, 5153-5155

Insertions

L

ins_11928:TG, ins_12108:TTTCAGTTTCACTATTTCCAGGGTGTGGGGGGAACGATT

M

ins_149:CTTGCTGATGAGGCCAGAACGA, ins_437:GACCGCCACCACTCCGGCCGTCCCCACACCAGGGCTACCA, ins_5205:TATGTACTTCT, ins_5246:GCCAGCTCAGTGA, ins_5289:ACGGTATCCTCCCTTGGGGCCTCCATCCTTGCCATTGATAATTGGTTATAATATTAGAACAGCCGAC

S

ins_1577:A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references