This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000S6GB.1

China/LOC_000S6GB.1/2023
W. Shi, H. Zhou & Y. Wang

Shandong First Medical University & Shandong Academy of Medical Sciences, Key Laboratory of Etiology and Epidemiology of Emerging Infectious Diseases in Universities of Shandong

Sample details

Collection date
2023
Earliest release date
2025-10-20
Sampling location
China
Isolate name
CCHFV/XHYYL_8/2023/China/Xinjiang

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2025-10-20
INSDC accession L segment
INSDC accession M segment
INSDC accession S segment

Host

Host

Submission details

Submission ID
PV023454.1.L/PV023455.1.M/PV023456.1.S
Submitting group
Date submitted
2026-09-04 12:42:59 UTC
Date released
2026-09-04 12:47:25 UTC

Clade & Lineage

Closest reference L segment
singleReference (variant)
Closest reference M segment
M (OR047158.1) (variant)
Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
218
Total inserted nucs S segment
3
Total deleted nucs S segment
2
Length S segment
1646 (91.1%)
Total SNPs M segment
357
Total inserted nucs M segment
69
Length M segment
5065 (92.5%)
Total SNPs L segment
1627
Total inserted nucs L segment
45
Total ambiguous nucs L segment
1
Length L segment
12137 (99.9%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, OR047158.1 & OL774851.1 references

Substitutions

L segment

  • G23T
  • A35G
  • C37T
  • G43C
  • T49C
  • A50G
  • C63G
  • C64T
  • T65C
  • T66C
  • G69A
  • G71T
  • A74G
  • G88A
  • G93A
  • G98A
  • A109G
  • A124G

M segment

  • A408G
  • G416A
  • A427C
  • C444T
  • A446G
  • C447T
  • G449A
  • G460A
  • G464A
  • T465C
  • T472A
  • G476A
  • G477A
  • T487C
  • T494C
  • T495C
  • C503T
  • A509G

S segment

  • T16A
  • C31G
  • T32C
  • G34A
  • A45G
  • C48T
  • G75A
  • A84G
  • A98T
  • A102G
  • C123T
  • C126T
  • T128A
  • T141C
  • C150T
  • T166C
  • C171A
  • A173G
Deletions

S segment

1596, 1597
Insertions

L segment

ins_58:T, ins_11925:GT, ins_12054:TACAGTTCT, ins_12083:GCTATTT, ins_12108:TTCATTATTTCCAGGGTGTGGGGGGA

M segment

ins_5401:CAGTTAACTGCACTGCCAAACACCACTCTGGCCTAACTTTACCTGGACTTAACCTTGACTGCGTGCCGC

S segment

ins_0:GT, ins_1514:T

Amino acid substitutions

Substitutions called relative to the NC_005301.3, OR047158.1 & OL774851.1 references

Substitutions

GPC

  • GPC:K111R
  • GPC:A114T
  • GPC:P123L
  • GPC:T124V
  • GPC:A125T
  • GPC:V130T
  • GPC:G134K
  • GPC:L140P
  • GPC:P143S
  • GPC:T145A
  • GPC:I146T
  • GPC:G149D
  • GPC:D153N
  • GPC:D156N
  • GPC:T158A
  • GPC:T162A
  • GPC:H165Y
  • GPC:A182T

NP

  • NP:Y20F
  • NP:F30Y
  • NP:D44E
  • NP:K45R
  • NP:D116E
  • NP:N150H
  • NP:Q179L
  • NP:D199E
  • NP:R270K
  • NP:S275N
  • NP:R428K

RdRp

  • RdRp:S6N
  • RdRp:D8N
  • RdRp:S19T
  • RdRp:I45M
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:I114V
  • RdRp:T163A
  • RdRp:E167G
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:T215A
Deletions
N/A
Insertions
N/A

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