This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000S6GB.1

China/LOC_000S6GB.1/2021
W. Shi, H. Zhou & Y. Wang

Shandong First Medical University & Shandong Academy of Medical Sciences, Key Laboratory of Etiology and Epidemiology of Emerging Infectious Diseases in Universities of Shandong

Sample details

Collection date
2021
Earliest release date
2025-10-20
Sampling location
China
Isolate name
CCHFV/XMLLC14/2021/China/Xinjiang

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2025-10-20
INSDC accession L segment
INSDC accession M segment
INSDC accession S segment

Host

Host

Submission details

Submission ID
PV023448.1.L/PV023449.1.M/PV023450.1.S
Submitting group
Date submitted
2026-09-11 12:57:03 UTC
Date released
2026-09-11 13:01:51 UTC

Clade & Lineage

Closest reference L segment
singleReference (variant)
Closest reference M segment
M (MH396653.1) (variant)
Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs L segment
1524
Total inserted nucs L segment
2
Total deleted nucs L segment
2
Length L segment
12012 (99.2%)
Total SNPs M segment
632
Total inserted nucs M segment
1
Total deleted nucs M segment
12
Length M segment
5345 (98.1%)
Total SNPs S segment
219
Total inserted nucs S segment
3
Length S segment
1643 (90.8%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

L segment

  • G23T
  • G32A
  • A35G
  • A42G
  • G43C
  • T49C
  • T55G
  • C59T
  • T62C
  • G71T
  • A92G
  • G93A
  • T106C
  • A109G
  • G112A
  • T114C
  • G119A
  • T121A

M segment

  • A53G
  • G65A
  • T67C
  • G72A
  • C73T
  • A76G
  • T78C
  • G80A
  • C82T
  • A84G
  • T94C
  • A108G
  • T116C
  • C118T
  • T122C
  • A127G
  • G132A
  • C133T

S segment

  • T16A
  • C22T
  • C31G
  • T32C
  • G34A
  • A45G
  • C48T
  • C81T
  • A84G
  • A98T
  • A102G
  • C126T
  • T141C
  • C150T
  • A164T
  • T166C
  • C183T
  • A186G
Deletions

L segment

64, 65

M segment

5285-5296
Insertions

L segment

ins_11932:TT

M segment

ins_5166:A

S segment

ins_1520:CTT

Amino acid substitutions

Substitutions called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

GPC

  • GPC:Y7C
  • GPC:F10L
  • GPC:C15Y
  • GPC:K19G
  • GPC:N21H
  • GPC:P23S
  • GPC:N31K
  • GPC:H33D
  • GPC:V34A
  • GPC:M35V
  • GPC:P38S
  • GPC:D39S
  • GPC:P44S
  • GPC:S49R
  • GPC:A51T
  • GPC:L52Q
  • GPC:P58S
  • GPC:S64T

NP

  • NP:Y20F
  • NP:N42I
  • NP:D116E
  • NP:N125D
  • NP:N150H
  • NP:Q179L
  • NP:D199E
  • NP:R270K
  • NP:S275N
  • NP:R428K

RdRp

  • RdRp:S6D
  • RdRp:I13T
  • RdRp:G15R
  • RdRp:S19T
  • RdRp:I45V
  • RdRp:N52D
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67L
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:K91E
  • RdRp:R92K
  • RdRp:T163A
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
Deletions
N/A
Insertions
N/A

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