This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000S6GB.1

China/LOC_000S6GB.1/2008-05
X. Tan, Z. Gao, S. Zhu, Y. Zhang, Z. Zhu, D. Yan, D. Li, W. Yin & W. Xu

Chinese Center for Disease Control and Prevention, State Key Laboratory for Molecular Virology & Genetic Engineering, National Institute for Viral Disease Control and Prevention

Sample details

Collection date
2008-05
Earliest release date
2011-11-23
Sampling location
China
Isolate name
C1/FY08-C30-P9

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-23 16:00insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2011-11-23
NCBI update date
2011-11-23
INSDC accession

Host

Host

Submission details

Submission ID
GU198368.1
Submitting group
Date submitted
2026-04-23 16:00:29 UTC
Date released
2026-04-23 16:04:24 UTC

Clade

Clade EV-A71
C4

Genotype

Genotype
EV-A71

Alignment and QC

Total SNPs
1458
Total inserted nucs
8
Total deleted nucs
13
Length
7358 (99.4%)

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • T51C
  • A54T
  • T61C
  • A76G
  • T95C
  • T99A
  • C106A
  • T138C
  • T142C
  • G143A
  • G145A
  • T149C
  • A150T
  • C156T
  • G157A
  • C158T
  • A159G
  • A180T
Deletions

48, 101-103, 119, 120, 693, 707, 743, 7333-7335, 7398
Insertions

ins_89:A, ins_128:C, ins_701:CT, ins_738:GCT, ins_7327:G

Amino acid substitutions

Substitutions called relative to the U22521.1 reference

Substitutions

2A

  • 2A:T26N
  • 2A:N57D
  • 2A:R68M
  • 2A:V82I
  • 2A:F83Y
  • 2A:E102Q
  • 2A:S129N

2B

  • 2B:R11D
  • 2B:D19E
  • 2B:H31Y
  • 2B:V47I
  • 2B:S85A
  • 2B:M95I

2C

  • 2C:I21V
  • 2C:F22S
  • 2C:I37V
  • 2C:K41R
  • 2C:V60I
  • 2C:A75V
  • 2C:I81S
  • 2C:R151H
  • 2C:A173T
  • 2C:V200I
  • 2C:T271S
  • 2C:N315S

3A

  • 3A:E39D
  • 3A:T47A

3B

  • 3B:P9Q
  • 3B:I10V
  • 3B:V15A

3C

  • 3C:A18V
  • 3C:I36V
  • 3C:V49I
  • 3C:I54V
  • 3C:V75I
  • 3C:C89F
  • 3C:V93N
  • 3C:T95S
  • 3C:G96T
  • 3C:I109M
  • 3C:P144A
  • 3C:I157V
  • 3C:I158V
  • 3C:A169G

3D

  • 3D:M6V
  • 3D:R10K
  • 3D:V33I
  • 3D:T44H
  • 3D:V74I
  • 3D:T75K
  • 3D:Q76E
  • 3D:D89E
  • 3D:K94Q
  • 3D:Y106N
  • 3D:V134T
  • 3D:T138V
  • 3D:L143F
  • 3D:N154Y
  • 3D:S163R
  • 3D:L165I
  • 3D:R169K
  • 3D:E172K

VP1

  • VP1:K18R
  • VP1:P22H
  • VP1:P30Q
  • VP1:D31N
  • VP1:K98E
  • VP1:R145E
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L
  • VP1:S240T
  • VP1:E244K
  • VP1:S246P
  • VP1:I249V
  • VP1:S275A
  • VP1:D282N
  • VP1:T289A

VP2

  • VP2:N45S
  • VP2:P94Q
  • VP2:N143D
  • VP2:S144T
  • VP2:M198I
  • VP2:T200A
  • VP2:F224Y

VP3

  • VP3:D93N
  • VP3:M100L
  • VP3:T232A
  • VP3:E237Q
  • VP3:A239G
Deletions
N/A
Insertions
N/A

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