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LOC_000S6GB.1
Download
Download FASTA
Download metadata TSV
Oman/LOC_000S6GB.1/1998-07-16
M. Zivcec,
L. Guerrero,
C. Albarino &
C. Spiropoulou
Centers for Disease Control and Prevention, Viral Special Pathogens Branch
Sample details
Collection date
1998-07-16
Earliest release date
2017-04-01
Sampling location
Oman
Isolate name
Oman_812956
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2017-04-01
INSDC accession L segment
KY362514.1
INSDC accession M segment
KY362518.1
INSDC accession S segment
KY362516.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
KY362514.1.L/KY362518.1.M/KY362516.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-09-19 07:58:20 UTC
Date released
2026-09-19 08:01:42 UTC
Clade & Lineage
Closest reference L segment
singleReference (variant)
Closest reference M segment
M (MH396653.1) (variant)
Closest reference S segment
S1 (OL774851.1) (variant)
Files
Annotations
LOC_000S6GB.1.embl
Alignment and QC
Total SNPs M segment
1035
Total inserted nucs M segment
5
Total deleted nucs M segment
6
Length M segment
5361 (98.3%)
Total SNPs L segment
1681
Total inserted nucs L segment
68
Length L segment
12176 (100%)
Total SNPs S segment
233
Total inserted nucs S segment
16
Length S segment
1673 (91.7%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L segment
T
10
C
G
23
T
G
32
A
A
35
G
A
36
T
A
38
G
G
43
C
A
44
G
T
49
C
C
63
G
C
64
T
T
65
C
T
66
C
G
71
C
C
76
T
C
82
T
T
86
C
T
97
C
Show more
M segment
G
46
T
A
47
G
G
52
A
A
53
C
C
62
T
G
65
A
A
66
G
T
67
A
G
72
T
A
76
G
T
78
C
T
79
C
T
87
C
C
88
T
T
94
C
T
96
C
T
98
C
C
99
T
Show more
S segment
T
16
A
C
31
G
T
32
C
C
66
T
A
84
G
T
90
C
A
93
G
A
98
T
A
102
G
C
150
T
T
156
C
T
159
C
T
166
C
A
173
G
G
174
A
G
180
A
A
186
G
C
192
T
Show more
Deletions
M segment
313-318
Insertions
L segment
ins_58:T, ins_11922:TC, ins_12092:GCTATTACACTTTCTTTATTGTTCTCATCAGTTTTATTATTTAATTGTTTCCAGGGTGTGGGGGG
M segment
ins_0:TCTC, ins_5166:A
S segment
ins_0:TCTCAAAGAAACACGT
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
C
15
W
GPC:
G
16
S
GPC:
L
17
P
GPC:
K
19
G
GPC:
N
21
R
GPC:
P
23
L
GPC:
H
24
S
GPC:
G
26
E
GPC:
E
28
Q
GPC:
N
31
E
GPC:
H
33
G
GPC:
V
34
I
GPC:
M
35
T
GPC:
T
36
R
GPC:
T
37
A
Show more
NP
NP:
Y
20
F
NP:
K
45
R
NP:
V
83
A
NP:
D
116
E
NP:
A
124
S
NP:
Q
179
L
NP:
D
199
E
NP:
V
205
I
NP:
R
270
K
NP:
A
307
V
NP:
E
322
D
NP:
Q
405
L
NP:
R
428
K
RdRp
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
I
157
M
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
I
223
M
RdRp:
S
229
Y
RdRp:
K
275
R
RdRp:
I
279
V
Show more
Deletions
GPC
GPC:76, GPC:77
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L segment
M segment
S segment
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