This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000S609.1

Senegal/LOC_000S609.1/2022
O. Sene, S. N. Sagne, D. Ngom, M. Bocoum, M. K. Diallo, A. Khoule, E. T. Faye, S. M. Diop, I. Diallo, C. Loucoubar, M. Diallo, N. Dia, Y. Sall, B. Diop, M. Ndiaye, A. A. Sall, M. Weidmann, M. M. Diagne, M. Fall, O. Faye, E. Simon-Loriere, D. Diallo, M. A. Barry & G. Fall

Institut Pasteur, Dakar, Virology

Sample details

Collection date
2022
Earliest release date
2025-01-15
Sampling location
Senegal
Isolate name
SH402092

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2025-01-15
INSDC accession L segment

Host

Host

Submission details

Submission ID
PP845328.1.L
Submitting group
Date submitted
2026-11-02 13:32:02 UTC
Date released
2026-11-02 13:36:16 UTC

Clade & Lineage

Closest reference L segment
singleReference (variant)

Files

Annotations

Alignment and QC

Total SNPs L segment
294
Total inserted nucs L segment
52
Total ambiguous nucs L segment
12
Length L segment
12157 (99.9%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 reference

Substitutions

L segment

  • T10C
  • T62C
  • T65C
  • T70C
  • C75T
  • G93A
  • C94T
  • G130T
  • T151C
  • C244T
  • T254A
  • G286A
  • A298G
  • C313T
  • T340C
  • C343T
  • T550G
  • G553A
Deletions
N/A
Insertions

L segment

ins_12108:TTCATCGTCATCGTTATTATCTTGGGGTGTGGGGGGAACGATTTCTTTGAGA

Amino acid substitutions

Substitutions called relative to the NC_005301.3 reference

Substitutions

RdRp

  • RdRp:S6N
  • RdRp:Y60N
  • RdRp:I505T
  • RdRp:T767A
  • RdRp:K809R
  • RdRp:G812E
  • RdRp:T876S
  • RdRp:A1038T
  • RdRp:G1047E
  • RdRp:V1228I
  • RdRp:N1367D
  • RdRp:N1514S
  • RdRp:M1647L
  • RdRp:P1660T
  • RdRp:T1675N
  • RdRp:R1676K
  • RdRp:I1949V
  • RdRp:I1996V
Deletions
N/A
Insertions
N/A

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