This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
West Nile Virus
SeqSets
Login
Loculus
Organisms
CCHF (Multi-Ref)
Crimean-Congo Hemorrhagic Fever Virus
Ebola Sudan
Enterovirus
Test Dummy Organism
Test organism (with files)
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
West Nile Virus
|
Browse data
Submit sequences
Select organism section
Browse data
Submit sequences
LOC_000S609.1
Download
Download FASTA
Download metadata TSV
India/WNI821622H/1982-01-01
V. P. Bondre
National Institute of Virology (Indian Council of Medical Research), Microbial Containment Complex
Sample details
Collection date
1982
Earliest release date
2006-03-01
Sampling location
India
Isolate name
WNI821622H
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2006-03-01
NCBI update date
2016-07-26
INSDC accession
AY944247.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
AY944247.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-09-08 14:00:36 UTC
Date released
2026-09-08 14:01:45 UTC
Lineage
Lineage
5
Files
Annotations
LOC_000S609.1.embl
Alignment and QC
Total SNPs
188
Total inserted nucs
6
Total deleted nucs
6
Length
921 (8.35%)
Amino Acid Mutations from founder clade
capsid:
A
52
S
env:
L
23
I
env:
T
51
S
prM:
L
121
M
Variant
True
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
C
205
T
C
210
A
G
222
A
A
225
G
A
231
T
T
234
C
T
243
A
G
250
T
G
252
C
C
255
T
G
260
A
C
282
T
A
285
G
G
289
T
C
292
T
T
297
C
C
298
A
T
309
C
Show more
Deletions
418-423
Insertions
ins_444:TTAGGA
Amino acid substitutions
Substitutions called relative to the
NC_009942.1
reference
Substitutions
capsid
capsid:
A
52
S
capsid:
R
55
K
capsid:
V
65
L
capsid:
S
93
N
capsid:
I
95
M
capsid:
S
100
T
capsid:
K
108
V
capsid:
T
109
V
capsid:
I
111
V
capsid:
A
112
M
capsid:
V
113
A
capsid:
M
114
V
capsid:
I
115
L
capsid:
I
118
V
capsid:
S
120
C
capsid:
A
123
S
env
env:
S
16
T
env:
V
21
L
env:
L
23
I
env:
M
46
T
env:
A
51
S
prM
prM:
T
20
A
prM:
D
21
N
prM:
V
22
I
prM:
A
29
S
prM:
I
35
T
prM:
Y
43
F
prM:
V
55
A
prM:
S
57
A
prM:
S
72
A
prM:
T
98
A
prM:
M
112
L
prM:
L
121
M
prM:
A
139
V
prM:
T
149
N
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
Report an issue with this sequence or metadata
Create GitHub issue