This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000S609.1

Display Name: Taiwan/LOC_000S609.1/1998-06
H. Y. Wang, K. C. Tsao, C. H. Hsieh, L. M. Huang, T. Y. Lin, G. W. Chen, S. R. Shih, L. Y. Chang & L.-Y. Chang

Sample details

Collection date
1998-06
Collection date (lower bound)
1998-06-01
Collection date (upper bound)
1998-06-30
Earliest release date
2010-12-11
Collection country
Taiwan
Isolate name
TW-2743-98

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-23 13:28insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
National Taiwan University and Hospital, Department of Pediatrics

INSDC

NCBI release date
2010-12-11
INSDC accession EV-A71

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics EV-A71

Length EV-A71
2737
Total SNPs EV-A71
445
Total inserted nucs EV-A71
100
Total deleted nucs EV-A71
3149
Total ambiguous nucs EV-A71
0
Total unknown nucs EV-A71
200
Total frame shifts EV-A71
0
Completeness EV-A71
75.40%
Total stop codons EV-A71
0

Submission details

Submission ID
HQ283834.1.EV-A71
Submitting group
Date submitted
2025-11-23 13:27:43 UTC
Date released
2025-11-23 13:41:02 UTC

Clade

Clade EV-A71
A

Genotype

Genotype
EV-A71

Files

Annotations

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • G157A
  • C158T
  • T160C
  • A180T
  • C190T
  • A203G
  • T207C
  • G208T
  • A210G
  • A212G
  • T216C
  • C232T
  • G242A
  • T244C
  • C261T
  • A267C
  • G269A
  • T274G
    • Deletions
    681-2222, 2340-2438, 3882-5389
    Insertions
    ins_3329:NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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