This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000S609.1

Display Name: China/LOC_000S609.1/2010-09-21
L. He

Sample details

Collection date
2010-09-21
Collection date (lower bound)
2010-09-21
Collection date (upper bound)
2010-09-21
Earliest release date
2012-03-26
Collection country
China
Isolate name
YN59B/YN/CHN/10

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-01-07 17:00insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Yunnan Centers for Disease Control and Prevention, Immune Planning Division

INSDC

NCBI release date
2012-03-26
NCBI update date
2012-03-26
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
891
Total SNPs
174
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
12.03%
Total stop codons
0

Submission details

Submission ID
JQ264780.1
Submitting group
Date submitted
2026-01-07 17:00:16 UTC
Date released
2026-01-07 17:04:18 UTC

Clade

Clade EV-A71
C4

Genotype

Genotype
EV-A71

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • G2441A
  • C2444T
  • A2447G
  • G2459A
  • G2465A
  • C2468T
  • T2471C
  • T2480C
  • T2483C
  • G2484T
  • T2485C
  • A2487C
  • T2489C
  • A2490G
  • G2492C
  • G2493T
  • C2494T
  • C2495A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions

    VP1

  • VP1:V16S
  • VP1:S17R
  • VP1:K18D
  • VP1:A19L
  • VP1:P22H
  • VP1:P30Q
  • VP1:D31N
  • VP1:K98E
  • VP1:R145E
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L
  • VP1:S240T
  • VP1:E244K
  • VP1:S246P
  • VP1:I249V
  • VP1:S275A
  • VP1:D282N
    • Deletions
    None
    Insertions
    None

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