This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000S5UM.1

Display Name: China/LOC_000S5UM.1
L. Li, Y. He, H. Yang, J. Zhu, X. Xu, J. Dong, Y. Zhu & Q. Jin

Sample details

Collection date (upper bound)
2005-08-15
Earliest release date
2005-08-15
Collection country
China
Collection subdivision level 1
Shenzhen
Isolate name
shzh04-38

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-18 12:47insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
National Institute For Viral Disease Control and Prevention, Chinese CDC, The State Key Laboratory of Molecular Virology and Genetic Engineering

INSDC

NCBI release date
2005-08-15
INSDC accession EV-A71

Alignment and QC metrics EV-A71

Length EV-A71
3202
Total SNPs EV-A71
561
Total inserted nucs EV-A71
2
Total deleted nucs EV-A71
0
Total ambiguous nucs EV-A71
0
Total unknown nucs EV-A71
0
Total frame shifts EV-A71
0
Completeness EV-A71
43.20%

Submission details

Submission ID
AY895145.1.EV-A71
Submitting group
Date submitted
2025-10-18 12:47:12 UTC
Date released
2025-10-18 12:51:36 UTC

Clade

Clade EV-A71
C4

Genotype

Genotype
EV-A71

Files

Annotations

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • T138C
  • T142C
  • G143A
  • G145A
  • A146C
  • A148G
  • T149C
  • A150T
  • C156T
  • G157A
  • C158T
  • A159G
  • A180T
  • T207C
  • G208T
  • A210G
  • A212G
  • G224A
    • Deletions
    None
    Insertions
    ins_739:CT

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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