This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000S5UM.1

USA/IL2005ScCr/2005-07-13
L. Bertolotti, U. Kitron & T. L. Goldberg

University of Illinois at Urbana Champaign, Pathobiology

Sample details

Collection date
2005-07-13
Earliest release date
2006-12-15
Sampling location
USA (Illinois, Saintclair)
Isolate name
IL2005ScCr

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-15 16:20insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2006-12-15
NCBI update date
2016-07-14
INSDC accession

Host

Host

Submission details

Submission ID
DQ874406.1
Submitting group
Date submitted
2026-05-15 16:19:59 UTC
Date released
2026-05-15 16:24:38 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
5
Length
1575 (14.3%)
Amino Acid Mutations from founder clade
  • env:K93R
  • env:T126I
  • env:I159A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C969T
  • T1442C
  • C1465T
  • C2223T
  • C2466T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue