This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000S5UM.1

Display Name: Brazil/LOC_000S5UM.1/2007-03-07
M. B. de Almeida, R. M. Zerbinati, A. F. Tateno, C. M. Oliveira, R. M. Romao, J. C. Rodrigues, C. S. Pannuti, L. V. da Silva Filho & L. V. F. da Silva Filho

Sample details

Collection date
2007-03-07
Collection date (lower bound)
2007-03-07
Collection date (upper bound)
2007-03-07
Earliest release date
2010-04-20
Collection country
Brazil
Isolate name
VFC179

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-01-16 21:19insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Instituto de Medicina Tropical de Sao Paulo - USP, Laboratorio de Virologia

INSDC

NCBI release date
2010-04-20
NCBI update date
2010-05-25
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
341
Total SNPs
39
Total inserted nucs
2
Total deleted nucs
6
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
4.68%
Total stop codons
0

Submission details

Submission ID
GU933070.1
Submitting group
Date submitted
2026-01-16 21:19:03 UTC
Date released
2026-01-16 21:21:14 UTC

Genotype

Genotype
EV-D68

Nucleotide mutations

Mutations called relative to the AY426531.1 reference

Substitutions

  • G192C
  • T193C
  • A194C
  • T195C
  • A196G
  • A198G
  • T200G
  • G201T
  • C203G
  • C204T
  • C205A
  • C206A
  • A207G
  • G209T
  • G213C
  • A214C
  • A216T
  • A217G
    • Deletions
    241, 248, 249, 258, 271, 522
    Insertions
    ins_215:CG

    Amino acid mutations

    Mutations called relative to the AY426531.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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