This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000S5UM.1

Armenia/LOC_000S5UM.1/2022
A. Zhirova, Y. Lisitskaya, A. Volynkina, A. Manucharyan & G. Melik-Andreasyan

Stavropol State Research Anti-Plague Institute, Laboratory for diagnostics of viral infections

Sample details

Collection date
2022
Earliest release date
2025-03-02
Sampling location
Armenia
Isolate name
372-ARM-TI-2022

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2025-03-02
INSDC accession M segment

Host

Host

Submission details

Submission ID
PQ878913.1.M
Submitting group
Date submitted
2026-09-11 12:57:03 UTC
Date released
2026-09-11 13:01:51 UTC

Clade & Lineage

Closest reference M segment
M (MH396653.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs M segment
78
Length M segment
435 (7.97%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & MH396653.1 references

Substitutions

M segment

  • C4640T
  • T4645C
  • C4648T
  • A4660G
  • T4672C
  • C4678T
  • A4685G
  • A4690T
  • T4693C
  • A4709G
  • G4714A
  • C4720T
  • A4723G
  • A4726G
  • G4732A
  • T4738A
  • T4739C
  • G4741A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & MH396653.1 references

Substitutions

GPC

  • GPC:K1533E
  • GPC:E1534D
  • GPC:N1541D
  • GPC:N1564D
  • GPC:K1569R
  • GPC:N1586D
  • GPC:G1590S
  • GPC:I1591V
  • GPC:V1595F
  • GPC:F1600L
  • GPC:T1601L
  • GPC:T1604A
  • GPC:I1607V
  • GPC:I1610V
  • GPC:R1618K
  • GPC:K1648R
Deletions
N/A
Insertions
N/A

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