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LOC_000S5UM.1
Download
Download FASTA
Download metadata TSV
Democratic_Republic_of_the_Congo/LOC_000S5UM.1/1956
J. W. Koehler,
K. L. Delp,
B. J. Kearney,
T. A. Conrad,
R. J. Schoepp,
A. R. Garrison,
L. A. Altimura,
C. A. Rossi &
T. D. Minogue
USAMRIID, DSD
Sample details
Collection date
1956
Earliest release date
2017-04-02
Sampling location
Democratic Republic of the Congo
Isolate name
UCCR4432
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2017-04-02
INSDC accession L
KY484046.1
INSDC accession M
KY484047.1
INSDC accession S
KY484048.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
KY484046.1.L/KY484047.1.M/KY484048.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-07-13 16:59:07 UTC
Date released
2026-07-13 17:02:26 UTC
Lineage
Segment S Lineage
II
Files
Annotations
LOC_000S5UM.1.embl
Alignment and QC
Total SNPs L
2038
Total inserted nucs L
22
Total deleted nucs L
2
Length L
12128 (100%)
Total SNPs M
1565
Total inserted nucs M
73
Total deleted nucs M
51
Length M
5388 (100%)
Total SNPs S
262
Total deleted nucs S
32
Length S
1640 (100%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
G
23
T
A
35
G
G
43
T
C
48
T
G
57
C
C
59
T
C
63
G
T
65
C
G
71
T
A
72
G
A
73
G
C
82
A
T
83
C
C
85
T
G
90
A
G
93
A
G
98
A
A
109
G
Show more
M
G
50
T
A
51
G
A
52
T
T
54
C
G
55
A
G
56
T
A
57
T
T
58
A
T
59
A
A
61
G
T
65
A
A
69
G
A
70
T
T
71
A
T
72
G
G
76
A
T
79
C
A
80
G
Show more
S
T
39
A
A
50
G
G
54
A
A
61
G
C
64
T
G
67
A
A
78
C
T
79
C
A
81
G
A
85
G
A
118
G
A
121
G
G
122
A
A
124
T
C
154
T
T
157
C
C
166
T
T
175
C
Show more
Deletions
L
12073, 12074
M
714-728, 5259-5294
S
1539-1553, 1610-1626
Insertions
L
ins_60:C, ins_11931:AT, ins_12096:CCAGGGTGTGGGGGGAACG
M
ins_283:CAGTGTGCTGGA, ins_332:ACAACCACTAGGGAAGCAACAACC, ins_394:AAC, ins_472:CCCACAAGC, ins_5197:TGTGTCCTTTTTATAACTGATCATG
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
M
1
R
GPC:
H
2
L
GPC:
I
3
V
GPC:
S
4
L
GPC:
M
6
I
GPC:
Y
7
N
GPC:
A
8
L
GPC:
I
9
A
GPC:
L
12
Q
GPC:
Q
13
L
GPC:
C
15
E
GPC:
L
17
N
GPC:
G
18
D
GPC:
D
40
V
GPC:
N
41
T
GPC:
P
42
S
GPC:
S
43
A
GPC:
S
44
D
Show more
NP
NP:
N
8
T
NP:
N
9
S
NP:
G
23
S
NP:
D
116
G
NP:
T
124
A
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
A
256
D
NP:
R
270
K
NP:
S
275
G
NP:
I
277
V
NP:
S
301
G
NP:
A
307
P
NP:
Y
311
F
NP:
T
320
S
NP:
Q
370
E
NP:
V
436
I
RdRp
RdRp:
D
2
E
RdRp:
F
3
L
RdRp:
R
5
K
RdRp:
S
6
N
RdRp:
D
8
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
S
67
A
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
E
87
D
RdRp:
I
114
V
RdRp:
E
128
G
RdRp:
I
131
L
RdRp:
T
163
A
RdRp:
R
166
K
RdRp:
A
168
T
RdRp:
M
172
V
Show more
Deletions
GPC
GPC:19-38, GPC:176-210
Insertions
GPC
ins_GPC:92:MDSGSGELSTDPTTTREATTPITAATVSAQETKTHM, ins_GPC:213:AESNTISIPAQDTTISGVSKQDNPTTTGIS
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
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