This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000S49T.1

Kazakhstan/LOC_000S49T.1/2015
P. Deryabin, B. Atshabar, Y. Sansyzbaev, V. Berezin, T. Nurmakhanov, O. Yeskhojayev, A. Vilkova, A. Shevtsov, R. Hewson & B. Atkinson

Public Health England, Research

Sample details

Collection date
2015
Earliest release date
2016-07-03
Sampling location
Kazakhstan (Maktaaral district)
Isolate name
Kazakhstan 80

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2016-07-03
INSDC accession L

Host

Host

Submission details

Submission ID
KX129731.1.L
Submitting group
Date submitted
2026-07-24 13:47:39 UTC
Date released
2026-07-24 13:51:21 UTC

Files

Annotations

Alignment and QC

Total SNPs L
90
Total ambiguous nucs L
1
Length L
588 (4.85%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • G502A
  • T508A
  • A526G
  • C529T
  • T532C
  • T535C
  • G538T
  • C541T
  • T550G
  • G553A
  • A563G
  • A565T
  • A571G
  • G578A
  • G583A
  • C586T
  • A590G
  • G592A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

RdRp

  • RdRp:T163A
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:V175D
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K218R
  • RdRp:S229T
  • RdRp:K275R
  • RdRp:I279V
Deletions
N/A
Insertions
N/A

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