This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000S49T.1

Zambia/LOC_000S49T.1/2015
M. Kajihara, M. Simuunza, N. Saasa, G. Dautu, A. Mori-Kajihara, Y. Qiu, R. Nakao, Y. Eto, H. Furumoto, B. M. Hang'ombe, Y. Orba, H. Sawa, E. Simulundu, S. Fukushi, S. Morikawa, M. Saijo, J. Arikawa, S. Kabilika, M. Monze, V. Mukonka, A. Mweene, A. Takada & K. Yoshimatsu

Research Center for Zoonosis Control; Kita 20 Nishi 10, Kita-ku, Sapporo, Hokkaido 001-0020

Sample details

Collection date
2015
Earliest release date
2021-05-14
Sampling location
Zambia
Isolate name
ZT15-90

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-14 12:59insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2021-05-14
INSDC accession M

Host

Host

Submission details

Submission ID
LC534910.1.M
Submitting group
Date submitted
2026-05-14 12:58:54 UTC
Date released
2026-05-14 13:07:53 UTC

Files

Annotations

Alignment and QC

Total SNPs M
85
Length M
514 (9.58%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • T4613C
  • T4619C
  • C4622T
  • G4625A
  • T4634C
  • T4640C
  • T4643C
  • C4644T
  • A4646G
  • T4649C
  • C4652T
  • T4661G
  • A4664G
  • C4671T
  • G4689A
  • A4690G
  • C4697T
  • A4701C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:H1527Y
  • GPC:E1533R
  • GPC:K1537Q
  • GPC:Q1546R
  • GPC:S1564D
  • GPC:S1571G
  • GPC:V1595I
  • GPC:M1597I
  • GPC:I1599L
  • GPC:L1601I
  • GPC:L1603I
  • GPC:R1628K
  • GPC:R1648K
  • GPC:K1652R
  • GPC:R1672K
Deletions
N/A
Insertions
N/A

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