This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000QJPN.1

South_Africa/LOC_000QJPN.1/2017-03-01
C. MacIntyre

University of Pretoria, Medical Virology

Sample details

Collection date
2017-03
Earliest release date
2022-11-21
Sampling location
South Africa
Isolate name
ZRU080/17

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2022-11-21
NCBI update date
2022-11-21
INSDC accession

Host

Host

Submission details

Submission ID
OL790152.1
Submitting group
Date submitted
2026-07-20 09:55:47 UTC
Date released
2026-07-20 10:14:12 UTC

Lineage

Lineage
2

Files

Annotations

Alignment and QC

Total SNPs
35
Total deleted nucs
395
Total frame shifts
1
Frame shifts
NS5:657-905(nt:9648-10395)
Length
225 (5.62%)
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • A9069G
  • C9072T
  • A9084C
  • G9087A
  • C9090T
  • G9093A
  • A9096C
  • T9108C
  • C9123G
  • A9126G
  • T9135C
  • C9144T
  • G9147A
  • G9153C
  • T9156A
  • T9159C
  • T9180G
  • A9183T
Deletions
9253-9647
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS5

  • NS5:R522K
Deletions

NS5

NS5:525-656
Insertions
N/A

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