This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q3JD.1

Display Name: India/LOC_000Q3JD.1
J. M. Deshpande, S. S. Nadkarni & P. P. Francis

Sample details

Collection date (upper bound)
2003-11-30
Earliest release date
2003-11-30
Collection country
India
Isolate name
R13223-IND-01

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-18 12:47insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Enterovirus Research Centre

INSDC

NCBI release date
2003-11-30
INSDC accession EV-A71

Alignment and QC metrics EV-A71

Length EV-A71
646
Total SNPs EV-A71
93
Total inserted nucs EV-A71
2
Total deleted nucs EV-A71
2763
Total ambiguous nucs EV-A71
0
Total unknown nucs EV-A71
0
Total frame shifts EV-A71
0
Completeness EV-A71
45.99%

Submission details

Submission ID
AY179601.1.EV-A71
Submitting group
Date submitted
2025-10-18 12:47:12 UTC
Date released
2025-10-18 12:48:04 UTC

Clade

Clade EV-A71
A

Genotype

Genotype
EV-A71

Files

Annotations

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • T102C
  • C106A
  • T110G
  • C117T
  • C120T
  • A124C
  • A125T
  • C126A
  • A128T
  • T138C
  • T142C
  • A146G
  • A148G
  • T149C
  • T155C
  • G157A
  • C158T
  • A159G
    • Deletions
    738-3500
    Insertions
    ins_120:AT

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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