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LOC_000Q3JD.1
Download
Download FASTA
Download metadata TSV
China/LOC_000Q3JD.1/1966
A. Moming,
Q. Zhu,
Y. Bai,
J. Jin,
Q. Wu,
Z. Su,
S. Tang,
Y. Zhang,
S. Shen &
F. Deng
Wuhan Institute of Virology, Chinese Academy of Sciences
Sample details
Collection date
1966
Earliest release date
2023-08-21
Sampling location
China
Isolate name
66019
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-04 18:29
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2023-08-21
INSDC accession L
OR047185.1
INSDC accession M
OR047165.1
INSDC accession S
OR047145.1
Submission details
Submission ID
OR047185.1.L/OR047165.1.M/OR047145.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-04 18:29:04 UTC
Date released
2026-03-04 18:32:42 UTC
Host
Host
Homo sapiens
Files
Annotations
LOC_000Q3JD.1.embl
Alignment and QC
Total SNPs S
224
Total inserted nucs S
17
Total deleted nucs S
2
Length S
1672 (91.7%)
Variant S
False
Total SNPs L
1607
Total inserted nucs L
60
Length L
12168 (100%)
Variant L
False
Total SNPs M
1043
Total inserted nucs M
6
Length M
5368 (98.3%)
Variant M
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L segment
G
23
T
A
35
G
G
43
C
T
49
C
C
63
G
C
64
T
T
65
C
T
66
C
G
69
A
G
71
T
G
88
A
G
93
A
A
109
G
A
124
G
T
125
C
T
131
A
C
136
T
T
139
C
Show more
M segment
T
36
A
G
46
A
A
47
G
G
52
A
A
57
G
T
67
A
C
73
A
A
76
G
T
78
C
T
81
C
C
88
T
C
92
T
T
96
C
T
98
C
C
99
T
A
100
G
G
103
A
A
104
G
Show more
S segment
T
16
A
C
31
G
T
32
C
G
34
A
A
37
T
A
45
G
C
48
T
A
83
G
A
84
G
A
98
T
A
102
G
C
126
T
T
141
C
C
150
T
T
165
C
T
166
C
A
173
G
C
183
T
Show more
Deletions
S segment
1611, 1612
Insertions
L segment
ins_58:T, ins_11925:GT, ins_12059:TTCTCACAA, ins_12083:GCTATTT, ins_12096:GTTTATATCAGTTTCATTATTTCCAGGGTGTGGGGGGAACG
M segment
ins_0:TCTC, ins_5166:GA
S segment
ins_0:TCTCAAAGAAACACGT, ins_1520:C
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
H
2
Y
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
Y
7
C
GPC:
F
10
L
GPC:
L
12
P
GPC:
C
15
W
GPC:
G
16
S
GPC:
G
18
E
GPC:
K
19
G
GPC:
N
21
H
GPC:
G
22
V
GPC:
G
26
E
GPC:
E
28
K
GPC:
N
31
G
GPC:
H
33
G
GPC:
V
34
I
Show more
NP
NP:
K
15
R
NP:
Y
20
F
NP:
K
45
R
NP:
D
116
E
NP:
N
125
S
NP:
N
150
H
NP:
Q
179
L
NP:
D
199
E
NP:
R
270
K
NP:
S
275
N
NP:
I
277
T
NP:
N
399
D
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
Y
17
H
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
T
163
V
RdRp:
E
167
G
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
RdRp:
I
279
V
Show more
Deletions
N/A
Insertions
N/A
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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